CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28410	Canola	golgi, nucleus, plasma membrane	74.47	14.23
CDY66560	Canola	cytosol, mitochondrion, nucleus, peroxisome	92.55	12.39
CDY64893	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	91.49	12.25
CDY45470	Canola	mitochondrion	90.43	12.25
CDY45970	Canola	mitochondrion	90.43	12.2
AT1G63010.5	Thale cress	cytosol, mitochondrion, peroxisome, plasma membrane	90.43	12.01
KRH35227	Soybean	plasma membrane	81.91	11.05
VIT_02s0025g04540.t01	Wine grape	extracellular	79.79	10.74
CDY10843	Canola	mitochondrion	78.72	10.65
KRG91596	Soybean	mitochondrion	78.72	10.62
KRH08812	Soybean	cytosol, peroxisome, plasma membrane	77.66	10.5
CDY41259	Canola	mitochondrion	77.66	10.43
KRH38329	Soybean	cytosol, peroxisome, plasma membrane	76.6	10.36
CDY13281	Canola	cytosol, peroxisome, plasma membrane	75.53	10.09
CDX86744	Canola	cytosol, peroxisome, plasma membrane	75.53	10.09
CDY41366	Canola	extracellular, golgi	15.96	9.43
CDX73315	Canola	mitochondrion	0.0	0.0
CDX71233	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDX93857	EnsemblPlantsGene:GSBRNA2T00156653001	GO:A0A078DY73	PANTHER:PTHR23510	PANTHER:PTHR23510:SF55	ProteinID:CDX93857
ProteinID:CDX93857.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE83AB	MapMan:35.1	:

Description

BnaC04g20160D

Coordinates

chrLK031878:-:52367..53018

Molecular Weight (calculated)

10229.8 Da

IEP (calculated)

9.923

GRAVY (calculated)

0.763

Length

94 amino acids

Sequence
(BLAST)

1: MLKHAMEILL SESSAIILLT SEIIVFIGIL FSFNIVNLLL LSRVMSWRLS KGTYNRGLLS TEAGTLARVV ADATITLGGY LGRNHLLNAT LLPS

Best Arabidopsis Sequence Match ( AT1G63010.2 )
(BLAST)

001: MVAFGKYLQR KQIEEWSGYY INYKLMKKKV KQYAEQIQGG SQHPRHVLKD FSRMLDTQIE TTVLFMLEQQ GLLSGRLAKL RESHDAILEQ PDISRIFELR
101: EAYRDVGRDL LQLLKFVELN AIGLRKILKK FDKRFGYRFA DYYVKTRANH PYSQLQQVFK HVGVGAVVGA ISRNLHELQE NEGSFYSIYD QPVLPAQDPV
201: VEAINNAVDK LTFSTNFLNF LAQHALIMQD DLVTPSEDTI DERSYHFNSL LLNLGNTFLY MVNTYIIVPT ADDYSMSLGA AATVCGVVIG SMAVAQVFSS
301: VYFSAWSNKS YFKPLVFSSI ALFIGNLMYA LAYDANSIAL LLLGRVCCGL GSARAVNRRY ISDCVPLRIR MQASAGFVSA SALGMACGPA LAGLLQIKFK
401: FYKFTFNQST LPGWVMAVAW LFYLVWLCIS FREPLRDTED GEKNNRNETT SDRVESSRVE EGLRLPLLIT SGIKPEDEEE CDESEESPED SHKPANSFIE
501: AYRLLTPSVK VQLLIYFMLK YSMEILLSES SVITSYYFSW TTSSVAIFLA CLGLTVLPIN ILVGSYISNM FEDRQILLTS EIIVFLGILF SFNLFVPYTV
601: PQYVISGLIM FVAAEVLEGV NLSLLSRVMS SRLSKGTYNG GLLSTEAGTL ARVVADATIT LGGYLGRGHL LNATLLPSLV ICIGSIVATC CTYNSLY

Arabidopsis Description

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I0G7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.