CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71233	Canola	nucleus	21.54	20.29
Bra034426.1-P	Field mustard	cytosol, nucleus, plasma membrane	99.23	19.08
CDY28410	Canola	golgi, nucleus, plasma membrane	63.85	16.87
Solyc10g050320.1.1	Tomato	cytosol	12.31	16.67
VIT_15s0048g01090.t01	Wine grape	cytosol	73.08	13.65
KRH00680	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	71.54	13.34
CDY10843	Canola	mitochondrion	70.77	13.24
KRH40511	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	70.77	13.2
CDY41259	Canola	mitochondrion	70.0	13.0
CDY45970	Canola	mitochondrion	69.23	12.91
CDY45470	Canola	mitochondrion	68.46	12.82
CDY13281	Canola	cytosol, peroxisome, plasma membrane	68.46	12.64
CDX86744	Canola	cytosol, peroxisome, plasma membrane	68.46	12.64
CDY64893	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	67.69	12.54
CDY66560	Canola	cytosol, mitochondrion, nucleus, peroxisome	67.69	12.54
PGSC0003DMT400000009	Potato	cytosol, peroxisome, plastid	43.08	10.37
Solyc12g082710.1.1	Tomato	cytosol	12.31	6.93
PGSC0003DMT400056104	Potato	cytosol	0.77	0.58
CDY41366	Canola	extracellular, golgi	0.0	0.0
Solyc04g026050.1.1	Tomato	extracellular	0.0	0.0
Solyc08g044470.1.1	Tomato	cytosol	0.0	0.0
Solyc10g050310.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
CDX93857	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73315	EnsemblPlantsGene:GSBRNA2T00106416001	PANTHER:PTHR23510	PANTHER:PTHR23510:SF55	ProteinID:CDX73315	ProteinID:CDX73315.1
UniParc:UPI0004EF3291	MapMan:35.1	:	:	:	:

Description

BnaC05g27910D

Coordinates

chrLK031798:+:1455348..1456079

Molecular Weight (calculated)

14663.7 Da

IEP (calculated)

8.783

GRAVY (calculated)

0.072

Length

130 amino acids

Sequence
(BLAST)

001: MNAIGIRKIL KKIDKHFGYK FTDYYVKTRS NHPYSQLQQV LKQVDSMVDS INAAVKRLSN STSFLDFLGK HAFIILEDSP SLEDPVPEEK FHFVSLLLNL
101: VNAFLYMVNT YIVVPTADSY SISLGAAATV

Best Arabidopsis Sequence Match ( AT1G63010.2 )
(BLAST)

001: MVAFGKYLQR KQIEEWSGYY INYKLMKKKV KQYAEQIQGG SQHPRHVLKD FSRMLDTQIE TTVLFMLEQQ GLLSGRLAKL RESHDAILEQ PDISRIFELR
101: EAYRDVGRDL LQLLKFVELN AIGLRKILKK FDKRFGYRFA DYYVKTRANH PYSQLQQVFK HVGVGAVVGA ISRNLHELQE NEGSFYSIYD QPVLPAQDPV
201: VEAINNAVDK LTFSTNFLNF LAQHALIMQD DLVTPSEDTI DERSYHFNSL LLNLGNTFLY MVNTYIIVPT ADDYSMSLGA AATVCGVVIG SMAVAQVFSS
301: VYFSAWSNKS YFKPLVFSSI ALFIGNLMYA LAYDANSIAL LLLGRVCCGL GSARAVNRRY ISDCVPLRIR MQASAGFVSA SALGMACGPA LAGLLQIKFK
401: FYKFTFNQST LPGWVMAVAW LFYLVWLCIS FREPLRDTED GEKNNRNETT SDRVESSRVE EGLRLPLLIT SGIKPEDEEE CDESEESPED SHKPANSFIE
501: AYRLLTPSVK VQLLIYFMLK YSMEILLSES SVITSYYFSW TTSSVAIFLA CLGLTVLPIN ILVGSYISNM FEDRQILLTS EIIVFLGILF SFNLFVPYTV
601: PQYVISGLIM FVAAEVLEGV NLSLLSRVMS SRLSKGTYNG GLLSTEAGTL ARVVADATIT LGGYLGRGHL LNATLLPSLV ICIGSIVATC CTYNSLY

Arabidopsis Description

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I0G7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.