CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plasma membrane
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93857	Canola	endoplasmic reticulum, extracellular	14.23	74.47
Bra034426.1-P	Field mustard	cytosol, nucleus, plasma membrane	98.17	71.45
CDX73315	Canola	mitochondrion	16.87	63.85
PGSC0003DMT400000009	Potato	cytosol, peroxisome, plastid	68.5	62.41
VIT_15s0048g01090.t01	Wine grape	cytosol	71.34	50.43
KRH00680	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	70.94	50.07
KRH40511	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	70.73	49.93
CDY10843	Canola	mitochondrion	68.09	48.2
CDY41259	Canola	mitochondrion	67.89	47.71
CDY13281	Canola	cytosol, peroxisome, plasma membrane	67.07	46.88
CDX86744	Canola	cytosol, peroxisome, plasma membrane	66.67	46.59
CDY64893	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	65.65	46.01
CDY66560	Canola	cytosol, mitochondrion, nucleus, peroxisome	65.65	46.01
CDY45970	Canola	mitochondrion	64.63	45.62
CDY45470	Canola	mitochondrion	64.23	45.53
CDY41366	Canola	extracellular, golgi	14.63	45.28
PGSC0003DMT400056104	Potato	cytosol	14.02	39.88
Solyc04g026050.1.1	Tomato	extracellular	7.93	27.86
Solyc08g044470.1.1	Tomato	cytosol	6.3	22.79
Solyc10g050320.1.1	Tomato	cytosol	3.05	15.62
Solyc12g082710.1.1	Tomato	cytosol	3.86	8.23
CDX71233	Canola	nucleus	1.42	5.07
Solyc10g050310.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	1.02	2.76

Protein Annotations

MapMan:24.2.2.2.3	GO:A0A078GPA9	UniProt:A0A078GPA9	EnsemblPlants:CDY28410	ProteinID:CDY28410	ProteinID:CDY28410.1
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00040254001	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690
PANTHER:PTHR23510	PANTHER:PTHR23510:SF55	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0004EF3D35	SEG:seg

Description

BnaA05g18300DBnaA05g18300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPA9]

Coordinates

chrLK032219:+:370355..372237

Molecular Weight (calculated)

54121.8 Da

IEP (calculated)

6.054

GRAVY (calculated)

0.651

Length

492 amino acids

Sequence
(BLAST)

001: MVDSINAAVK RLSNSTSFLD FLGKHAFIIL EDSPSLEDPV SEEKFHFVSL LLNLVNAFLY MVNTYIVVPT ADSYSISLGA AATVCGVVIG SMAVAQLFSS
101: VYFSSWSNRS YLKPLLFSSI VLLAGNILYA LAYDMKSIVV LLLGRLLCGL GSARVINMRY ISDCVPLKLR MKASAGFVSA SALGMACGPA LACLFQTHFK
201: ICNLTFNEAT LPGWFMALAW LVFLLLLLIY FKEPEREIKE NVLSPEGRPS SFCTLEENLM APFLVKCKTK TAYEEESCDE DGPKEDQKPV TSIISAYQLL
301: SPSVKVQLFV YFMLKYAMEI LLAESSVITT YYFVWQTSAV AIFLACLGLT VLPVNVIVGH YLSNKFEERK ILLASEIMLC IGILLSFHII VPYSVPQYVA
401: SALITFVSAE VLEGVNLSLL SRVMSSRLSR GTFNGGLLST EAGTLARVIA DGTITVSGFL PERWLLNVTL LPSLLICLSS IIATTFTYNY LY

Best Arabidopsis Sequence Match ( AT4G11810.1 )
(BLAST)

001: MVAFGKKLKE RSIEEWQEYY INYKLMKKKV KQYGPQIEVG SLDRRHVLKD FSRMLDHQIE KIALFMLEQQ GLLSSRLQKL REWHDTLQDE PDLSQIAKLR
101: EAYRAVGQDL LKLLFFIDMN AIGIRKILKK FDKRFGYRFT NYYVKTRADH PYSQLQQVFR HVGLGAVVGA ISRNLHELQN NEGSYLSIYD QPVLPLQDPV
201: VDSIKNAVDR LTHSTNFLNF MAQHALIMQD DEDLLMLPPD EQAEKEEGRY HFMSLLLNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GVVIGAMAVA
301: QLFSSVYFSA WSNKSYFKPL IFSSIVLFFG NLLYALAYDF NSLALLLIGR LFCGFGSARA VNRRYISDCV PLKIRMQASA GFVSASALGM ACGPALAGLL
401: QTDFKIKNVT FNQDTLPGWV MAVAWLLYLV WLAISFREPA REPEEIHTSQ ESTSEQIFCG EADQDGNIEK GLKKPLLLAS EETEHDEEDD GDGSEESSDD
501: SRKPANSFVA AYKLLTPSVK VQLLIYFMLK YAMEILLSES SVVTTYYFGW SMSSVSIFLF CLGLTVLPVN LVVGSYISNM FEDRQILLAS EIMVCIGIVL
601: SFHVVIPYTV PQYVISGFIM FVSAEVLEGV NLSLLSRVMS SRLSRGTYNG GLLSTEAGTI ARVIADATIT LAGFLGQSML LNVTLLPSLI ICVLSILATC
701: YTYNSLY

Arabidopsis Description

SPX domain-containing membrane protein At4g11810 [Source:UniProtKB/Swiss-Prot;Acc:Q9T050]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.