CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86744	Canola	cytosol, peroxisome, plasma membrane	99.29	99.29
AT4G11810.1	Thale cress	plasma membrane	90.2	89.82
CDY10843	Canola	mitochondrion	81.96	83.02
CDY41259	Canola	mitochondrion	81.39	81.86
VIT_02s0025g04540.t01	Wine grape	extracellular	77.7	78.37
KRH38329	Soybean	cytosol, peroxisome, plasma membrane	76.99	77.99
Solyc08g080200.2.1	Tomato	unclear	74.29	77.83
PGSC0003DMT400058570	Potato	cytosol, peroxisome, plasma membrane	76.85	77.62
KRH08812	Soybean	cytosol, peroxisome, plasma membrane	76.42	77.41
PGSC0003DMT400032620	Potato	mitochondrion	76.28	77.38
CDY64893	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	77.13	77.35
CDY45470	Canola	mitochondrion	76.14	77.23
Solyc08g007800.2.1	Tomato	unclear	73.3	77.13
CDY66560	Canola	cytosol, mitochondrion, nucleus, peroxisome	76.85	77.07
CDY45970	Canola	mitochondrion	76.14	76.9
KRG91596	Soybean	mitochondrion	75.99	76.76
KRH35227	Soybean	plasma membrane	75.71	76.47
Solyc12g056440.1.1	Tomato	unclear	75.43	76.18
CDX93857	Canola	endoplasmic reticulum, extracellular	10.09	75.53
PGSC0003DMT400010867	Potato	extracellular, plasma membrane, vacuole	27.27	74.71
CDX71233	Canola	nucleus	13.64	69.57
CDX73315	Canola	mitochondrion	12.64	68.46
CDY28410	Canola	golgi, nucleus, plasma membrane	46.88	67.07
CDY41366	Canola	extracellular, golgi	12.64	55.97

Protein Annotations

MapMan:24.2.2.2.3	GO:A0A078FJA5	UniProt:A0A078FJA5	EnsemblPlants:CDY13281	ProteinID:CDY13281	ProteinID:CDY13281.1
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00071249001	InterPro:IPR004331	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf
PFAM:PF03105	PFAM:PF07690	PFscan:PS51382	PANTHER:PTHR23510	PANTHER:PTHR23510:SF55	InterPro:SPX_dom
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0004EE5759	SEG:seg	:	:

Description

BnaC09g23750DBnaC09g23750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJA5]

Coordinates

chrLK032033:+:659467..662344

Molecular Weight (calculated)

78880.7 Da

IEP (calculated)

5.389

GRAVY (calculated)

0.201

Length

704 amino acids

Sequence
(BLAST)

001: MVAFGKKLKE RSIEEWQEYY INYKLMKKKV KQYGRQIEVG SLDRRHVLKD FSRMLDHQIE KISLFMLEQQ GLLSSRLQKL RECHDALQDE PDISQISNLR
101: EAYRSVGQDL LKLLVFIDTN AIGIRKILKK FDKRFGYRFT NYYVKTRADH PYSQLQQVFK HVGLGAVVGA ISRNLHELQN NQGSFLSIYD QPVVPLQDPV
201: VDSIKNAVDR LTRSTNFLNF MAQHALIMQD EDLLIHEDQA DQEEGRYHFM SLLLNLANTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF
301: SSVYFSAWSN KSYFKPLIFS SIVLFVGNLV YALAYDFNSL ALLLIGRLFC GFGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQTN
401: FKIYNLTFNQ DTLPGWVMAV AWLMYLVWLA ISFVEPAREP EEVHTSQESN SESLMFDEAD QDGNMEKGLT KQLLLAQDET EHDDEDDCDG SEESAEDSRK
501: PANSFVAAYT LLTPSVKVQL LIYFMLKYAM EILLSESSVV TTYYFGWSMS SVSIFLFCLG LTVLPVNLVV GSYISNMFED RQILLASEIM VCVGILLSFH
601: VVVPYTVPQY VISGFIMFVS AEVLEGVNLS LLSRVMSSRL SRGTYNGGLL STEAGTIARV IADATITVAG FLGQSMLLNV TLLPSLIICV GSIVATCFTF
701: NSLY

Best Arabidopsis Sequence Match ( AT4G11810.1 )
(BLAST)

001: MVAFGKKLKE RSIEEWQEYY INYKLMKKKV KQYGPQIEVG SLDRRHVLKD FSRMLDHQIE KIALFMLEQQ GLLSSRLQKL REWHDTLQDE PDLSQIAKLR
101: EAYRAVGQDL LKLLFFIDMN AIGIRKILKK FDKRFGYRFT NYYVKTRADH PYSQLQQVFR HVGLGAVVGA ISRNLHELQN NEGSYLSIYD QPVLPLQDPV
201: VDSIKNAVDR LTHSTNFLNF MAQHALIMQD DEDLLMLPPD EQAEKEEGRY HFMSLLLNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GVVIGAMAVA
301: QLFSSVYFSA WSNKSYFKPL IFSSIVLFFG NLLYALAYDF NSLALLLIGR LFCGFGSARA VNRRYISDCV PLKIRMQASA GFVSASALGM ACGPALAGLL
401: QTDFKIKNVT FNQDTLPGWV MAVAWLLYLV WLAISFREPA REPEEIHTSQ ESTSEQIFCG EADQDGNIEK GLKKPLLLAS EETEHDEEDD GDGSEESSDD
501: SRKPANSFVA AYKLLTPSVK VQLLIYFMLK YAMEILLSES SVVTTYYFGW SMSSVSIFLF CLGLTVLPVN LVVGSYISNM FEDRQILLAS EIMVCIGIVL
601: SFHVVIPYTV PQYVISGFIM FVSAEVLEGV NLSLLSRVMS SRLSRGTYNG GLLSTEAGTI ARVIADATIT LAGFLGQSML LNVTLLPSLI ICVLSILATC
701: YTYNSLY

Arabidopsis Description

SPX domain-containing membrane protein At4g11810 [Source:UniProtKB/Swiss-Prot;Acc:Q9T050]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.