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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • cytosol 1
  • plasma membrane 3
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane, vacuole
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032620 Potato mitochondrion 97.46 93.95
Solyc08g080200.2.1 Tomato unclear 84.01 83.63
Solyc12g056440.1.1 Tomato unclear 82.51 79.2
VIT_02s0025g04540.t01 Wine grape extracellular 81.76 78.37
KRH38329 Soybean cytosol, peroxisome, plasma membrane 80.12 77.12
KRH08812 Soybean cytosol, peroxisome, plasma membrane 79.97 76.98
KRH35227 Soybean plasma membrane 79.07 75.9
KRG91596 Soybean mitochondrion 78.77 75.61
AT4G22990.3 Thale cress cytosol, mitochondrion, nucleus, plasma membrane 78.92 75.43
CDY10843 Canola mitochondrion 77.28 74.39
Bra014869.1-P Field mustard cytosol, peroxisome, plasma membrane 77.28 74.17
CDY41259 Canola mitochondrion 77.43 74.0
Bra013668.1-P Field mustard mitochondrion 77.28 73.86
CDX86744 Canola cytosol, peroxisome, plasma membrane 77.28 73.44
AT4G11810.1 Thale cress plasma membrane 77.58 73.41
CDY13281 Canola cytosol, peroxisome, plasma membrane 77.13 73.3
Solyc01g091870.2.1 Tomato cytosol 70.1 67.19
Solyc10g050320.1.1 Tomato cytosol 3.74 26.04
Solyc04g026050.1.1 Tomato extracellular 5.38 25.71
Solyc08g044470.1.1 Tomato cytosol 4.93 24.26
Solyc12g082710.1.1 Tomato cytosol 4.04 11.69
Solyc10g050310.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 0.45 1.66
Solyc02g043960.1.1 Tomato extracellular 0.0 0.0
Protein Annotations
MapMan:24.2.2.2.3GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0055085InterPro:IPR004331InterPro:IPR020846UniProt:K4CIR7InterPro:MFSInterPro:MFS_dom
InterPro:MFS_trans_sfPFAM:PF03105PFAM:PF07690PFscan:PS51382PANTHER:PTHR23510PANTHER:PTHR23510:SF55
InterPro:SPX_domSUPFAM:SSF103473EnsemblPlantsGene:Solyc08g007800.2EnsemblPlants:Solyc08g007800.2.1TMHMM:TMhelixUniParc:UPI000276C854
SEG:seg:::::
Description
No Description!
Coordinates
chr8:-:2311212..2317511
Molecular Weight (calculated)
74672.0 Da
IEP (calculated)
5.986
GRAVY (calculated)
0.266
Length
669 amino acids
Sequence
(BLAST)
001: MKKKLKQYAN QSQAVVPDRR FVLKDFSRML DNQIETIVLF LLEKQGALAS RISGLNEQKD LLQEVPDIAK IDELREAYQA VGRDLLKLLY FVEINAIGLR
101: KILKKFDKRF GYKFTDYYVK TRANHPYSQL QQVFKHVGLG AVVGAISRNL ADLQDRKGSY LSIYDQPALP LQDPVVDSMK AAVDRLSHST NFLNFLAQHA
201: LIMQDELPTP VEEGVDDQRY HFMSLLLNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GIVIGAMAVA QIFSSVYFSA WSNRSYFRPL IFSSIVLFIG
301: NVMYALAYDL NSIPVLLIGR LFCGFGSARA VNRRYISDCV PLKYRMQASA GFVSASALGM ACGPAVAGLL QTNFKIYKIT VNKETLPGWL MAIAWLIYLI
401: WLWFSFKEPV RDTEIKNVPQ ESKAEPDSLE KGIVEPLLLK SPENQQDEDE QEGDESEEAS EDSHKPANSI VAAYRLLTPS VKVQLLIYFM LKYAMEILLS
501: ESSVISTYYF SWSTGHVAVF LACLGLTVLP VNLVVGSYIS NMFEDRQILL ASEIMVCVGI LMSFNVIIPY SVPQYVCSGL LLFVSAEVLE GVNLSLLSRV
601: MSSRLSRGTY NGGLLSTEAG TIARVIADAT ITLAGYLGES MLLNVTLLPS FFICIVSILA TFWTYNSLY
Best Arabidopsis Sequence Match ( AT4G22990.1 )
(BLAST)
001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV KQYSRQLEGG NLERRHVLKD FSRMLDNQIE KIALFMLEQQ GLLASRLQTL RGSHDALQEQ PDISHMSYLK
101: EEYRAVGQDL LKLLFFVEMN AIGIRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVFR HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV
201: VDSIRAAVDR LTRSTNFLHF MAQHALIMQE ELPSPQDEEG EEEDGRYHFM SLLLNLVNTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF
301: SSVYFSAWSN RSYFKPLIFS SIVLFIGNLL YALAFDFNSI AVLLIGRLFC GLGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQIR
401: FKIYKLTFNQ DTLPGWVMAV AWLIYLVWLA ISFREPAREP EEIPKTSEES NHSAVQDVNL EKGMKQPLLL TSEEIEEQGE DECDGSEEAS EDSRTPANSI
501: LAAYRLLTPS VKVQLLIYFM LKYAMEILLS ESSVITTYYF GWSTSSVAIF LFCLGLTVLP VNLVVGSYIS NMFEDRQILL VSEIMVCVGI LLSFHVVVPY
601: TVPQYVCSGL IMFVSAEVLE GVNLSLLSRV MSSRLSRGTY NGGLLSTEAG TIARVIADAT ITVAGFFGRN MLLNVTLLPS LVICVLSIVA TCFTYNSLY
Arabidopsis Description
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JMQ7]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.