Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014869.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 89.67 | 90.96 |
| CDY13281 | Canola | cytosol, peroxisome, plasma membrane | 89.82 | 90.2 |
| CDX86744 | Canola | cytosol, peroxisome, plasma membrane | 89.67 | 90.06 |
| AT4G22990.3 | Thale cress | cytosol, mitochondrion, nucleus, plasma membrane | 84.02 | 84.86 |
| VIT_02s0025g04540.t01 | Wine grape | extracellular | 78.08 | 79.08 |
| KRH38329 | Soybean | cytosol, peroxisome, plasma membrane | 77.37 | 78.7 |
| KRH08812 | Soybean | cytosol, peroxisome, plasma membrane | 76.66 | 77.99 |
| Solyc08g007800.2.1 | Tomato | unclear | 73.41 | 77.58 |
| Solyc08g080200.2.1 | Tomato | unclear | 73.69 | 77.53 |
| PGSC0003DMT400032620 | Potato | mitochondrion | 76.1 | 77.52 |
| PGSC0003DMT400058570 | Potato | cytosol, peroxisome, plasma membrane | 76.24 | 77.33 |
| KRG91596 | Soybean | mitochondrion | 76.24 | 77.33 |
| KRH35227 | Soybean | plasma membrane | 75.95 | 77.04 |
| Solyc12g056440.1.1 | Tomato | unclear | 75.39 | 76.47 |
| PGSC0003DMT400010867 | Potato | extracellular, plasma membrane, vacuole | 27.72 | 76.26 |
| AT1G63010.5 | Thale cress | cytosol, mitochondrion, peroxisome, plasma membrane | 74.96 | 74.86 |
| GSMUA_Achr11P... | Banana | cytosol | 69.73 | 70.73 |
| KXG19184 | Sorghum | cytosol | 69.59 | 70.39 |
| Zm00001d036020_P002 | Maize | cytosol | 69.45 | 70.24 |
| GSMUA_Achr1P18870_001 | Banana | cytosol | 69.31 | 70.1 |
| Os06t0129400-02 | Rice | plasma membrane | 69.02 | 69.91 |
| HORVU7Hr1G011890.1 | Barley | cytosol, mitochondrion, peroxisome, plasma membrane | 68.88 | 69.57 |
| TraesCS4A01G425300.1 | Wheat | cytosol, mitochondrion, peroxisome, plasma membrane | 68.74 | 69.43 |
| TraesCS7A01G063700.3 | Wheat | cytosol, mitochondrion, peroxisome, plasma membrane | 68.74 | 69.43 |
| Os04t0573000-01 | Rice | plasma membrane | 67.47 | 68.53 |
| Os02t0678200-01 | Rice | plasma membrane | 67.04 | 68.01 |
| GSMUA_Achr5P10440_001 | Banana | cytosol, nucleus, plasma membrane | 67.61 | 67.9 |
| OQU82184 | Sorghum | cytosol | 66.76 | 67.82 |
| EES07458 | Sorghum | cytosol | 66.76 | 67.82 |
| Zm00001d017597_P001 | Maize | cytosol | 66.34 | 67.77 |
| HORVU6Hr1G065710.13 | Barley | cytosol | 66.9 | 67.77 |
| TraesCS6B01G267800.1 | Wheat | cytosol | 66.2 | 67.44 |
| TraesCS6D01G238500.1 | Wheat | cytosol | 66.2 | 67.44 |
| TraesCS2D01G396700.1 | Wheat | nucleus | 66.76 | 67.43 |
| TraesCS2B01G417200.1 | Wheat | nucleus | 66.62 | 67.29 |
| TraesCS2A01G399200.1 | Wheat | nucleus | 66.48 | 67.14 |
| HORVU2Hr1G094690.1 | Barley | cytosol | 66.62 | 67.0 |
| TraesCS7D01G058400.1 | Wheat | cytosol | 67.75 | 66.9 |
| TraesCS6A01G257300.1 | Wheat | cytosol | 65.63 | 66.48 |
| Zm00001d002614_P004 | Maize | cytosol, peroxisome, plasma membrane | 66.2 | 65.55 |
| Zm00001d045491_P003 | Maize | cytosol, nucleus, plasma membrane | 68.88 | 63.58 |
| TraesCS5B01G310500.1 | Wheat | cytosol | 61.53 | 62.77 |
| TraesCS5A01G309800.1 | Wheat | cytosol | 61.39 | 62.63 |
| TraesCS5D01G316800.1 | Wheat | cytosol, peroxisome, plasma membrane | 61.39 | 62.54 |
| HORVU5Hr1G080250.1 | Barley | cytosol | 60.96 | 62.1 |
| Zm00001d026070_P002 | Maize | cytosol, peroxisome, plasma membrane | 54.6 | 60.88 |
| Os09t0521800-00 | Rice | cytosol, peroxisome | 57.99 | 59.42 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plasma membrane | 49.36 | 58.46 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.81 | 50.38 |
Protein Annotations
| MapMan:24.2.2.2.3 | EntrezGene:826787 | ProteinID:AEE83051.1 | ArrayExpress:AT4G11810 | EnsemblPlantsGene:AT4G11810 | RefSeq:AT4G11810 |
| TAIR:AT4G11810 | RefSeq:AT4G11810-TAIR-G | EnsemblPlants:AT4G11810.1 | TAIR:AT4G11810.1 | Unigene:At.54285 | ProteinID:CAB44319.1 |
| ProteinID:CAB78224.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0006810 | GO:GO:0006817 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0055085 | InterPro:IPR004331 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom | InterPro:MFS_trans_sf |
| RefSeq:NP_192918.1 | PFAM:PF03105 | PFAM:PF07690 | PO:PO:0000293 | PFscan:PS51382 | PANTHER:PTHR23510 |
| PANTHER:PTHR23510:SF55 | UniProt:Q9T050 | InterPro:SPX_dom | SUPFAM:SSF103473 | TMHMM:TMhelix | UniParc:UPI00000A0D44 |
| SEG:seg | : | : | : | : | : |
Description
SPX domain-containing membrane protein At4g11810 [Source:UniProtKB/Swiss-Prot;Acc:Q9T050]
Coordinates
chr4:+:7104510..7108523
Molecular Weight (calculated)
79423.5 Da
IEP (calculated)
5.675
GRAVY (calculated)
0.178
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAFGKKLKE RSIEEWQEYY INYKLMKKKV KQYGPQIEVG SLDRRHVLKD FSRMLDHQIE KIALFMLEQQ GLLSSRLQKL REWHDTLQDE PDLSQIAKLR
101: EAYRAVGQDL LKLLFFIDMN AIGIRKILKK FDKRFGYRFT NYYVKTRADH PYSQLQQVFR HVGLGAVVGA ISRNLHELQN NEGSYLSIYD QPVLPLQDPV
201: VDSIKNAVDR LTHSTNFLNF MAQHALIMQD DEDLLMLPPD EQAEKEEGRY HFMSLLLNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GVVIGAMAVA
301: QLFSSVYFSA WSNKSYFKPL IFSSIVLFFG NLLYALAYDF NSLALLLIGR LFCGFGSARA VNRRYISDCV PLKIRMQASA GFVSASALGM ACGPALAGLL
401: QTDFKIKNVT FNQDTLPGWV MAVAWLLYLV WLAISFREPA REPEEIHTSQ ESTSEQIFCG EADQDGNIEK GLKKPLLLAS EETEHDEEDD GDGSEESSDD
501: SRKPANSFVA AYKLLTPSVK VQLLIYFMLK YAMEILLSES SVVTTYYFGW SMSSVSIFLF CLGLTVLPVN LVVGSYISNM FEDRQILLAS EIMVCIGIVL
601: SFHVVIPYTV PQYVISGFIM FVSAEVLEGV NLSLLSRVMS SRLSRGTYNG GLLSTEAGTI ARVIADATIT LAGFLGQSML LNVTLLPSLI ICVLSILATC
701: YTYNSLY
101: EAYRAVGQDL LKLLFFIDMN AIGIRKILKK FDKRFGYRFT NYYVKTRADH PYSQLQQVFR HVGLGAVVGA ISRNLHELQN NEGSYLSIYD QPVLPLQDPV
201: VDSIKNAVDR LTHSTNFLNF MAQHALIMQD DEDLLMLPPD EQAEKEEGRY HFMSLLLNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GVVIGAMAVA
301: QLFSSVYFSA WSNKSYFKPL IFSSIVLFFG NLLYALAYDF NSLALLLIGR LFCGFGSARA VNRRYISDCV PLKIRMQASA GFVSASALGM ACGPALAGLL
401: QTDFKIKNVT FNQDTLPGWV MAVAWLLYLV WLAISFREPA REPEEIHTSQ ESTSEQIFCG EADQDGNIEK GLKKPLLLAS EETEHDEEDD GDGSEESSDD
501: SRKPANSFVA AYKLLTPSVK VQLLIYFMLK YAMEILLSES SVVTTYYFGW SMSSVSIFLF CLGLTVLPVN LVVGSYISNM FEDRQILLAS EIMVCIGIVL
601: SFHVVIPYTV PQYVISGFIM FVSAEVLEGV NLSLLSRVMS SRLSRGTYNG GLLSTEAGTI ARVIADATIT LAGFLGQSML LNVTLLPSLI ICVLSILATC
701: YTYNSLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.