Factsheet for PGSC0003DMT400032620

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
vacuole 1
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007800.2.1	Tomato	unclear	93.95	97.46
PGSC0003DMT400058570	Potato	cytosol, peroxisome, plasma membrane	84.44	84.07
VIT_02s0025g04540.t01	Wine grape	extracellular	82.42	81.95
KRH38329	Soybean	cytosol, peroxisome, plasma membrane	80.98	80.86
KRH08812	Soybean	cytosol, peroxisome, plasma membrane	80.84	80.72
PGSC0003DMT400010867	Potato	extracellular, plasma membrane, vacuole	29.83	80.54
KRH35227	Soybean	plasma membrane	79.83	79.48
KRG91596	Soybean	mitochondrion	79.39	79.05
AT4G22990.3	Thale cress	cytosol, mitochondrion, nucleus, plasma membrane	79.54	78.86
CDY10843	Canola	mitochondrion	77.67	77.55
CDY41259	Canola	mitochondrion	77.95	77.29
Bra014869.1-P	Field mustard	cytosol, peroxisome, plasma membrane	77.52	77.19
Bra013668.1-P	Field mustard	mitochondrion	77.81	77.14
CDX86744	Canola	cytosol, peroxisome, plasma membrane	77.52	76.42
CDY13281	Canola	cytosol, peroxisome, plasma membrane	77.38	76.28
AT4G11810.1	Thale cress	plasma membrane	77.52	76.1
GSMUA_Achr1P18870_001	Banana	cytosol	73.63	73.1
GSMUA_Achr11P...	Banana	cytosol	72.48	72.17
GSMUA_Achr5P10440_001	Banana	cytosol, nucleus, plasma membrane	73.2	72.16
Os06t0129400-02	Rice	plasma membrane	72.33	71.92
Zm00001d036020_P002	Maize	cytosol	72.33	71.82
KXG19184	Sorghum	cytosol	72.05	71.53
TraesCS7A01G063700.3	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	71.61	71.0
TraesCS4A01G425300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	71.47	70.86
HORVU7Hr1G011890.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	71.47	70.86
Os04t0573000-01	Rice	plasma membrane	70.89	70.69
PGSC0003DMT400000009	Potato	cytosol, peroxisome, plastid	54.76	70.37
OQU82184	Sorghum	cytosol	69.88	69.68
Os02t0678200-01	Rice	plasma membrane	69.31	69.01
HORVU2Hr1G094690.1	Barley	cytosol	69.74	68.85
Zm00001d017597_P001	Maize	cytosol	68.59	68.79
TraesCS2D01G396700.1	Wheat	nucleus	69.16	68.57
TraesCS2A01G399200.1	Wheat	nucleus	69.02	68.43
TraesCS7D01G058400.1	Wheat	cytosol	70.46	68.3
TraesCS2B01G417200.1	Wheat	nucleus	68.88	68.29
EES07458	Sorghum	cytosol	68.44	68.25
TraesCS6D01G238500.1	Wheat	cytosol	67.87	67.87
TraesCS6B01G267800.1	Wheat	cytosol	67.72	67.72
Zm00001d002614_P004	Maize	cytosol, peroxisome, plasma membrane	69.6	67.65
HORVU6Hr1G065710.13	Barley	cytosol	67.72	67.34
TraesCS6A01G257300.1	Wheat	cytosol	67.58	67.19
Zm00001d045491_P003	Maize	cytosol, nucleus, plasma membrane	71.76	65.01
TraesCS5B01G310500.1	Wheat	cytosol	62.97	63.06
TraesCS5A01G309800.1	Wheat	cytosol	62.97	63.06
TraesCS5D01G316800.1	Wheat	cytosol, peroxisome, plasma membrane	62.82	62.82
HORVU5Hr1G080250.1	Barley	cytosol	62.82	62.82
Zm00001d026070_P002	Maize	cytosol, peroxisome, plasma membrane	57.06	62.46
GSMUA_AchrUn_...	Banana	mitochondrion, plasma membrane	51.44	59.8
Os09t0521800-00	Rice	cytosol, peroxisome	59.37	59.71
GSMUA_AchrUn_...	Banana	cytosol	20.46	53.79
PGSC0003DMT400056104	Potato	cytosol	13.11	52.6

Protein Annotations

EntrezGene:102585086	MapMan:24.2.2.2.3	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR004331	InterPro:IPR020846	UniProt:M1AXP8	InterPro:MFS
InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF03105	PFAM:PF07690	EnsemblPlantsGene:PGSC0003DMG400012523	PGSC:PGSC0003DMG400012523
EnsemblPlants:PGSC0003DMT400032620	PFscan:PS51382	PANTHER:PTHR23510	PANTHER:PTHR23510:SF55	InterPro:SPX_dom	SUPFAM:SSF103473
TMHMM:TMhelix	UniParc:UPI0002957641	RefSeq:XP_006358386.1	SEG:seg	:	:

Description

SPX domain-containing membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012523]

Coordinates

chr8:+:124092..133704

Molecular Weight (calculated)

77861.9 Da

IEP (calculated)

6.144

GRAVY (calculated)

0.223

Length

694 amino acids

Sequence
(BLAST)

001: MVSFGKKLKG RQIQEWQGYY INYKLMKRKL KQYANQSQAV VPDRRFVLKD FSRMLDHQIE TIVLFLLEQQ GALASRISEL NEQKDSLQEV PDISKIDELR
101: EVYQAVGRDL LKLLYFVEIN AIGLRKILKK FDKRFGYKFT DYYVKTRANH PYSQLQQVFK HVGLGAVVGA ISRNLADLQD RQGSYLSIYD QPALPLQDPV
201: VDSMQAAVDR LSHSTNFLNF LAQHALIMQE ELPAPVEEGV DDQRYHFMSL LLNLANTFLY MVNTYIIVPT ADDYSMSLGA AATVCGIVIG AMAVAQIFSS
301: VYFSAWSNRS YFRPLIFSSI VLFIGNVMYA LAYDLNSIPV LLIGRLFCGF GSARAVNRRY ISDCVPLKYR MQASAGFVSA SALGMACGPA VAGLLQTNFK
401: IYKITVNKET LPGWLMAIAW LIYLVWLWFS FKEPVRDTEI KNVPQESKAE PDSLEKGIVE PLLLKSPENQ QDEDEQEGDE SEEAPEDSHK PANSIVAAYR
501: LLTPSVKVQL LIYFMLKYAM EILLSESSVI TTYYFSWSTG HVAVFLACLG LTVLPVNLVV GSYITNMFED RQILLASEIM VCVGILMSFN VIIPYSVPQY
601: VCSGLLLFVS AEVLEGVNLS LLSRVMSSRL SRGTYNGGLL STEAGTIARV IADATITLAG YLGESMLLNI TLLPSLFICI VSILATFWTY NSLY

Best Arabidopsis Sequence Match ( AT4G22990.1 )
(BLAST)

001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV KQYSRQLEGG NLERRHVLKD FSRMLDNQIE KIALFMLEQQ GLLASRLQTL RGSHDALQEQ PDISHMSYLK
101: EEYRAVGQDL LKLLFFVEMN AIGIRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVFR HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV
201: VDSIRAAVDR LTRSTNFLHF MAQHALIMQE ELPSPQDEEG EEEDGRYHFM SLLLNLVNTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF
301: SSVYFSAWSN RSYFKPLIFS SIVLFIGNLL YALAFDFNSI AVLLIGRLFC GLGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQIR
401: FKIYKLTFNQ DTLPGWVMAV AWLIYLVWLA ISFREPAREP EEIPKTSEES NHSAVQDVNL EKGMKQPLLL TSEEIEEQGE DECDGSEEAS EDSRTPANSI
501: LAAYRLLTPS VKVQLLIYFM LKYAMEILLS ESSVITTYYF GWSTSSVAIF LFCLGLTVLP VNLVVGSYIS NMFEDRQILL VSEIMVCVGI LLSFHVVVPY
601: TVPQYVCSGL IMFVSAEVLE GVNLSLLSRV MSSRLSRGTY NGGLLSTEAG TIARVIADAT ITVAGFFGRN MLLNVTLLPS LVICVLSIVA TCFTYNSLY

Arabidopsis Description

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JMQ7]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.