Factsheet for Solyc01g088600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004238	Potato	cytosol	95.85	95.85
PGSC0003DMT400004237	Potato	cytosol	55.9	87.07
VIT_15s0021g00530.t01	Wine grape	cytosol	70.09	69.18
KRH66391	Soybean	nucleus	56.99	56.25
AT2G44640.1	Thale cress	cytosol	55.24	56.1
Bra000357.1-P	Field mustard	cytosol	55.9	55.53
CDY48243	Canola	plastid	55.9	55.53
GSMUA_Achr1P24040_001	Banana	cytosol	55.9	55.53
CDX83423	Canola	cytosol	55.68	55.31
Bra004852.1-P	Field mustard	plastid	55.9	55.29
CDX74674	Canola	plastid	55.9	55.29
KRH48903	Soybean	cytosol	55.02	52.5
CDX95608	Canola	cytosol	50.22	51.22
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	13.54	35.43
Solyc01g057040.2.1	Tomato	plastid	21.83	32.15

Protein Annotations

EnsemblPlants:Solyc01g088600.2.1	EnsemblPlantsGene:Solyc01g088600.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0016020	PANTHER:PTHR34954	PANTHER:PTHR34954:SF2	SEG:seg	UniParc:UPI0002761966	UniProt:K4AYQ0
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:83365661..83371406

Molecular Weight (calculated)

51193.6 Da

IEP (calculated)

9.615

GRAVY (calculated)

-0.245

Length

458 amino acids

Sequence
(BLAST)

001: MANMRTAMDA AFWDLNISTP RALDGTARSI PGEPIPLDRS TASKALRIQQ LSLLGNGFPL GIIPSYSPTT RKELGSFALQ SLLFKAATSN WWLGFTGQFR
101: PKKLVSDIKA ELSSVDEWEL PILKDIGKHF LEKSLYAFGL CSQLSLTPSS SLLLSTEKHG EKKGRRLRAM LFHKLPEYDI TLEAAWPELF LDHKGRYWEV
201: PESISLDCLS LVSEDGLRYR FGLHKNGGHP RAVDNITDEP PLSLMQGICG KAAVSYEKSR DFWRIKEKKE DIIIETDKGR IYRPSYDIRL REPHAAVSGI
301: IGGTLEAWLN NGSNSSSASK HRSPFAVDLF GSLCCTFQHG KFKESFGDLT RVDARLDVSS ALALTKQVSK VFRKASSNNA RDVLSSPRLE LILQQQVAGP
401: IVFRVDSKFS LNSPAGVQLE DFVCSLNYSL KLLKSGKVVA WYSPKRKEGM IELRLFEF

Best Arabidopsis Sequence Match ( AT2G44640.1 )
(BLAST)

001: MANLNSAIDS VFWDQNVSSP QTLEGTARSV PGEPFPLDGA RASRSHRIQQ LSLLREGFPL GIIPSLAPAS DKRLGSFSLN SLLLSPSSNN WWLGLVGQFK
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80503]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.