Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83423 | Canola | cytosol | 94.36 | 94.36 |
| Bra004852.1-P | Field mustard | plastid | 86.33 | 85.96 |
| CDX95608 | Canola | cytosol | 80.04 | 82.18 |
| AT2G44640.1 | Thale cress | cytosol | 78.96 | 80.71 |
| VIT_15s0021g00530.t01 | Wine grape | cytosol | 57.92 | 57.54 |
| PGSC0003DMT400004238 | Potato | cytosol | 55.97 | 56.33 |
| Solyc01g088600.2.1 | Tomato | cytosol, nucleus, plastid | 55.53 | 55.9 |
| KRH66391 | Soybean | nucleus | 54.88 | 54.53 |
| PGSC0003DMT400004237 | Potato | cytosol | 34.71 | 54.42 |
| KRH48903 | Soybean | cytosol | 53.8 | 51.67 |
| GSMUA_Achr1P24040_001 | Banana | cytosol | 50.98 | 50.98 |
| Bra040299.1-P | Field mustard | cytosol, nucleus, peroxisome | 32.97 | 32.48 |
Protein Annotations
Description
AT2G44640 (E=7e-192) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PDE320 (PIGMENT DEFECTIVE 320) (TAIR:AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Coordinates
chrA03:+:10713955..10716028
Molecular Weight (calculated)
50798.2 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.284
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLSSAIDS VFWDQNLSSP QTLEGTARSV PGEPFPVDGA RASRSHRIQQ LSLLREGFPL GTIPAFAPSS DKRLGSFSLN SLLLSPSSSN WWLGLVGQFK
101: PKKLFTDIKA SISKAEEWDL QLFKDTTKHI VDKSLYSLGL WTQIALGSSS SLLLSAERLG DKEGLRKKLM FVHPLEKHDL TVEAAWPDLF LDHKGLFWDV
201: PESLNFDLSS LAPETGLQYR FGVHKSKGDP HPVNAAGESG VGGEAPASLL PGLCAKAAVS YKAKRDLWRP KEEEDNNTEE DDDDDTPVFL PYDIRLKEPH
301: AAVSGIVGSS LAAWITGRGE KRSLISADVF GSACYTFQKG RFSKLYGDLT RVDARVDVSS ASALAKRIFS AVRRFKGSNK TDDDTLGSPR LSLIFQQQVA
401: GPIVFKVDSQ FQVGEGKFGA QMEDLIYSLN YSLRLLESGK VVAWYSPKRK EGMVELRVFE F
101: PKKLFTDIKA SISKAEEWDL QLFKDTTKHI VDKSLYSLGL WTQIALGSSS SLLLSAERLG DKEGLRKKLM FVHPLEKHDL TVEAAWPDLF LDHKGLFWDV
201: PESLNFDLSS LAPETGLQYR FGVHKSKGDP HPVNAAGESG VGGEAPASLL PGLCAKAAVS YKAKRDLWRP KEEEDNNTEE DDDDDTPVFL PYDIRLKEPH
301: AAVSGIVGSS LAAWITGRGE KRSLISADVF GSACYTFQKG RFSKLYGDLT RVDARVDVSS ASALAKRIFS AVRRFKGSNK TDDDTLGSPR LSLIFQQQVA
401: GPIVFKVDSQ FQVGEGKFGA QMEDLIYSLN YSLRLLESGK VVAWYSPKRK EGMVELRVFE F
001: MANLNSAIDS VFWDQNVSSP QTLEGTARSV PGEPFPLDGA RASRSHRIQQ LSLLREGFPL GIIPSLAPAS DKRLGSFSLN SLLLSPSSNN WWLGLVGQFK
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80503]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.