Factsheet for Bra040299.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72372	Canola	cytosol, extracellular	16.24	100.0
AT3G06960.1	Thale cress	cytosol	81.62	79.75
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	56.62	56.99
KRH12186	Soybean	cytosol, golgi, nucleus	55.13	55.13
KRH37207	Soybean	mitochondrion	42.52	53.07
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	27.78	53.06
Solyc01g057040.2.1	Tomato	plastid	33.97	51.13
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	18.59	49.71
Os01t0251000-01	Rice	plastid	45.94	46.44
GSMUA_Achr8P10930_001	Banana	cytosol	47.22	46.04
TraesCS3D01G176700.1	Wheat	cytosol	45.3	45.79
TraesCS3A01G164900.1	Wheat	cytosol	45.3	45.79
TraesCS3B01G200800.3	Wheat	cytosol	45.09	45.57
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	45.94	44.42
OQU86609	Sorghum	cytosol	42.73	43.57
HORVU3Hr1G034170.2	Barley	cytosol	45.09	41.87
Bra000357.1-P	Field mustard	cytosol	32.48	32.97
Bra004852.1-P	Field mustard	plastid	31.84	32.18

Protein Annotations

MapMan:5.8.2.3	EnsemblPlantsGene:Bra040299	EnsemblPlants:Bra040299.1	EnsemblPlants:Bra040299.1-P	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0008150	GO:GO:0008289	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707
GO:GO:0009941	GO:GO:0016020	GO:GO:0034196	GO:GO:0042803	GO:GO:0070300	GO:GO:1990052
UniProt:M4FGS1	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	UniParc:UPI000254493A	SEG:seg	:

Description

AT3G06960 (E=4e-168) PDE320, TGD4 | PDE320 (PIGMENT DEFECTIVE 320)

Coordinates

chrA01:+:28042439..28044176

Molecular Weight (calculated)

51893.3 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.101

Length

468 amino acids

Sequence
(BLAST)

001: MNRLRWVGEG DIWELDMSTP ITLEATARAV ANDPLPLGLS RGTRLSRPKQ AEFFHRFMAT PLIPSFSPLA GGLSLQKVLT FPFPNNWFVS LLGQFDVQRF
101: VSEVKKTEAF VRGSASRLST LGKQLKDKSL YALGFCSELL LTPEDTLLLT YDTYKCDPNK NPRAKAFPLH TLTAEAVWPG LYVDKDGEYW DVPLSMAIDL
201: ASLPAESGLS YRLCLHHHSG RPKKFNSDYD VEVDVEAPPP ASLLPGLSLK SAVSYRANMD LWRGITPKLE ACKPYDIFLS SPHVSVSGII GSVMTAAFGE
301: NSIRTKLEKD SEGVGGFSLH LPSVNSGFMA DALGRASLTA QYGNFQKLFF DLTRFHARLD FPHGLRFLSG ATSVAQELLN SRQPSLEAFQ RICPEVAVSL
401: QQQIVGPFSL RAESGIRIDL KNGSNPMTIH NTVFAVEYAL QVLASAKAVA WYSPKQREFM IELRFYET

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.