Factsheet for Os01t0251000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G164900.1	Wheat	cytosol	86.61	86.61
TraesCS3D01G176700.1	Wheat	cytosol	86.39	86.39
TraesCS3B01G200800.3	Wheat	cytosol	86.18	86.18
HORVU3Hr1G034170.2	Barley	cytosol	86.39	79.37
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	78.4	75.0
OQU86609	Sorghum	cytosol	73.87	74.51
GSMUA_Achr8P10930_001	Banana	cytosol	62.85	60.62
CDY72372	Canola	cytosol, extracellular	9.94	60.53
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	54.43	54.19
KRH12186	Soybean	cytosol, golgi, nucleus	49.03	48.5
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	25.49	48.16
Solyc01g057040.2.1	Tomato	plastid	31.97	47.59
AT3G06960.1	Thale cress	cytosol	48.81	47.18
KRH37207	Soybean	mitochondrion	37.58	46.4
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	46.44	45.94
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	16.2	42.86
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	15.33	40.57

Protein Annotations

MapMan:5.8.2.3	EMBL:AK100105	ProteinID:BAF04512.1	ProteinID:BAS71348.1	InterPro:DUF3769	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006810	GO:GO:0008150	GO:GO:0008289	GO:GO:0009507	GO:GO:0009536
GO:GO:0009707	GO:GO:0009941	GO:GO:0016020	GO:GO:0034196	GO:GO:0042803	GO:GO:0070300
GO:GO:1990052	EnsemblPlantsGene:Os01g0251000	EnsemblPlants:Os01t0251000-01	PFAM:PF12600	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1
UniProt:Q0JP16	UniParc:UPI0000DD8A54	SEG:seg	:	:	:

Description

Protein of unknown function DUF3769 domain containing protein. (Os01t0251000-01)

Coordinates

chr1:+:8284469..8289120

Molecular Weight (calculated)

51551.9 Da

IEP (calculated)

7.732

GRAVY (calculated)

-0.131

Length

463 amino acids

Sequence
(BLAST)

001: MLRRMRWMAD GDGRWELDVE TPATMEGAAR PVPGDPLPLG LSRGPRVTRT KQLDFLHRFM ASPLVPSFSA SGAGLSVHHA HLVHLAHNLS FTILEQLHVQ
101: KLVAVVKEKL SNRQEVSWSN DIKRHLHDVM SLGVGTELLI TPDTTLLLEL YNLKKGDRGK AIFRHKLPHQ NITLEASWPG LFIDKNGVYW DVPLSLSADL
201: ASVGSESGLS YHVLLQQNSG EPKCFGGGEE TSDVPVALLP GLCAKAAVSI KKSIDVWRKK EDKLKNVQPY DVFLSEPHVS FTGIIGAVAS GSFGDCSKRM
301: SMQNEILKSN AFKYFDERNK FAAFADLFAS VNFTAQHGNF QRLLLDLTRV SARLDISSGS LFLRGASQLA QDFFFSRRPD LETFCDVCPD VIVSLQQQIV
401: GPFSFRVEST VTIDPKKQDH FVRVDDSVFA IDWALKVLGS AKATAWYSPK HQEAMVELRF FET

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.