CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37207	Soybean	mitochondrion	73.29	91.47
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	64.1	64.52
CDY72372	Canola	cytosol, extracellular	10.47	64.47
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	20.73	55.43
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	20.73	55.43
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	55.13	55.13
AT3G06960.1	Thale cress	cytosol	56.41	55.11
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	28.21	53.88
Os01t0251000-01	Rice	plastid	48.5	49.03
TraesCS3A01G164900.1	Wheat	cytosol	48.08	48.6
TraesCS3B01G200800.3	Wheat	cytosol	48.08	48.6
TraesCS3D01G176700.1	Wheat	cytosol	48.08	48.6
GSMUA_Achr8P10930_001	Banana	cytosol	48.72	47.5
OQU86609	Sorghum	cytosol	44.87	45.75
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	47.22	45.66
HORVU3Hr1G034170.2	Barley	cytosol	48.08	44.64
KRH66391	Soybean	nucleus	35.26	35.56
KRH48903	Soybean	cytosol	34.4	33.54

Protein Annotations

EMBL:ACUP02009274	EnsemblPlants:KRH12186	EnsemblPlantsGene:GLYMA_15G157800	EntrezGene:100793455	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1
ProteinID:KRH12186	ProteinID:KRH12186.1	SEG:seg	UniParc:UPI000233BFC9	UniProt:I1MGV2	MapMan:5.8.2.3

Description

hypothetical protein

Coordinates

chr15:-:13220094..13224645

Molecular Weight (calculated)

52161.3 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.144

Length

468 amino acids

Sequence
(BLAST)

001: MTTRKLRWVM DGGGFWDLDI STPQTLDGLA CPVPGDPLPL SLSRGTRLSR PRQLQFMHRF MHAPLIPSCA KPHGLSLHRL LTLPFSDNWF VFLLGQFHLQ
101: RFFSSVKSSK EKPKELSSWL KTFGRHLQDK SLYALGISSE FQLGMDDTLL FGLDAYEDTE KPRGKAVFHH KFPDHDLTVE AVYPGLFVDT TGNYWDLPFS
201: MAVDLASVTT SDSSTAYHLC ARYTSGSPKQ FENVQNQNDR VPPPTLLPGL AFKSAFSYRK KVDIWRSEAK KLKLVQPYDI FLSNPHVSAS GIIGAAATTA
301: FGDNSARAQV EDGSPGFFLQ ASGIKSSFLA DIFASVSFTA QHGNFQRLFL DLTRFQARLD FPSGFKFLSA ATGLTQDLLN SQKPSMDAVQ AIIPNATLSL
401: QQQIVGPVSF RVDSGITVDL KNPDWPIHAL EPVFALEYAL QVLGSAKAVA WYCPKRQEFM AELRFFET

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.