CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	93.46	88.64
TraesCS3A01G164900.1	Wheat	cytosol	77.78	77.11
TraesCS3D01G176700.1	Wheat	cytosol	77.78	77.11
TraesCS3B01G200800.3	Wheat	cytosol	76.69	76.03
Os01t0251000-01	Rice	plastid	74.51	73.87
HORVU3Hr1G034170.2	Barley	cytosol	77.78	70.83
CDY72372	Canola	cytosol, extracellular	9.59	57.89
GSMUA_Achr8P10930_001	Banana	cytosol	58.61	56.04
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	51.42	50.75
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	25.71	48.16
Solyc01g057040.2.1	Tomato	plastid	31.81	46.95
KRH12186	Soybean	cytosol, golgi, nucleus	45.75	44.87
KRH37207	Soybean	mitochondrion	36.17	44.27
AT3G06960.1	Thale cress	cytosol	45.32	43.42
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	43.57	42.73
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	12.64	33.14
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	12.2	32.0

Protein Annotations

MapMan:35.1	UniProt:A0A1W0VWU8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0008150
GO:GO:0008289	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009941	GO:GO:0016020
GO:GO:0034196	GO:GO:0042803	GO:GO:0070300	GO:GO:1990052	EnsemblPlants:OQU86609	ProteinID:OQU86609
ProteinID:OQU86609.1	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	EnsemblPlantsGene:SORBI_3003G113300	UniParc:UPI0009DC91A0	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:10183842..10188034

Molecular Weight (calculated)

51349.4 Da

IEP (calculated)

7.612

GRAVY (calculated)

-0.123

Length

459 amino acids

Sequence
(BLAST)

001: MEGTVRPVPG DPLPLGLSRG YRVTRPKQLD FFHRFMASPL VPTFSATRDG LSVNHAHILY ITDNWSSIIL EKINVNKLMS VVKEKFANRQ EEASWTKDLK
101: KHLHDVMSLG VGTEILITPD TTLLLELFDI KKGNRGKAIF HHEAKNLDAL NLFDIQTPLY LLQLPHHNIT VQASWPGLFV DKRGAYWDVP LSLSADLSSV
201: GSSSGLSYHL LLQQNSGEPK CFGGDETDDV PIALLPGLCA KAAISIKKSI DVWRKKEDKL KSVQPYDIFL SDSHVSLTGI VGAVASGYLG NCSRRVAIRD
301: ETQKSNAFRM FDERNKCAAF ADLFASVTFT ARYGNFQRLF LDLTKASARF DITSGSLFLC GASRLAQDFF FSRRPDVETF CDICPDVTVS LQQQIVGPFS
401: FRVESSVAFD PRSQDHFVRV DDPIFAIDWA LKVLGSAKAT AWYSPKHQEA MVELRFYET

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.