Factsheet for Solyc01g057040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 1
extracellular 5
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72372	Canola	cytosol, extracellular	15.43	63.16
GSMUA_Achr8P10930_001	Banana	cytosol	52.73	34.17
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	51.13	33.97
AT3G06960.1	Thale cress	cytosol	50.48	32.78
Os01t0251000-01	Rice	plastid	47.59	31.97
TraesCS3A01G164900.1	Wheat	cytosol	47.59	31.97
TraesCS3D01G176700.1	Wheat	cytosol	47.59	31.97
OQU86609	Sorghum	cytosol	46.95	31.81
TraesCS3B01G200800.3	Wheat	cytosol	47.27	31.75
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	47.27	30.37
HORVU3Hr1G034170.2	Barley	cytosol	48.23	29.76
Solyc01g088600.2.1	Tomato	cytosol, nucleus, plastid	32.15	21.83
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	2.25	4.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0008150	GO:GO:0008289
GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009941	GO:GO:0016020	GO:GO:0034196
GO:GO:0042803	GO:GO:0070300	GO:GO:1990052	UniProt:K4AVR8	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1
EnsemblPlantsGene:Solyc01g057040.2	EnsemblPlants:Solyc01g057040.2.1	UniParc:UPI0002761B05	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:57961279..57966186

Molecular Weight (calculated)

34957.5 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.040

Length

311 amino acids

Sequence
(BLAST)

001: MQNYFYIRFF PFFQFLHHNL TMEAAWPGLF VDGNGSYWDV PFSLALDLAS ATLNSGASYH LFFNNCAGSP KQYEGQHSDE LPPPAALLPG FTAKGVVSLK
101: KNIDLWRSEA SMQKMVQPYD IFLSNPHISA SWILGAVFSA YLGESSTKRQ QSCSLRGLKD FDLRAQVSNS AVSVDSFASA SLTAQHGNFQ RLFLDLTRVH
201: TSFDFPSGSK LLSGLTSVAY SLYNSQVPNV EALQAICPRA SLSFQQQMIG PFSFRVDSEI EIDLKKDWYL SVKNPVFAIE HALQVLWSAK AVAWYSPMQR
301: EFMVELRFFE T

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.