Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051483 | Potato | endoplasmic reticulum, mitochondrion, nucleus | 96.57 | 96.57 |
| VIT_05s0020g00870.t01 | Wine grape | cytosol, mitochondrion, peroxisome | 62.29 | 23.44 |
| KRH12186 | Soybean | cytosol, golgi, nucleus | 55.43 | 20.73 |
| TraesCS3A01G164900.1 | Wheat | cytosol | 41.14 | 15.55 |
| TraesCS3B01G200800.3 | Wheat | cytosol | 41.14 | 15.55 |
| TraesCS3D01G176700.1 | Wheat | cytosol | 41.14 | 15.55 |
| Os01t0251000-01 | Rice | plastid | 40.57 | 15.33 |
| HORVU3Hr1G034170.2 | Barley | cytosol | 40.57 | 14.09 |
| GSMUA_Achr8P10930_001 | Banana | cytosol | 37.71 | 13.75 |
| Zm00001d040259_P001 | Maize | cytosol, extracellular, nucleus | 37.71 | 13.64 |
| Solyc01g088600.2.1 | Tomato | cytosol, nucleus, plastid | 35.43 | 13.54 |
| OQU86609 | Sorghum | cytosol | 32.0 | 12.2 |
| KRH37207 | Soybean | mitochondrion | 25.14 | 11.73 |
| Solyc01g057040.2.1 | Tomato | plastid | 4.0 | 2.25 |
| PGSC0003DMT400051484 | Potato | cytosol, extracellular, nucleus | 1.14 | 0.82 |
Protein Annotations
| EnsemblPlants:Solyc01g057020.2.1 | EnsemblPlantsGene:Solyc01g057020.2 | PANTHER:PTHR34954 | PANTHER:PTHR34954:SF1 | SEG:seg | UniParc:UPI0002761B03 |
| UniProt:K4AVR6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:57949567..57950703
Molecular Weight (calculated)
20115.6 Da
IEP (calculated)
10.614
GRAVY (calculated)
-0.140
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKLRWAMDS GGFWELDLST PITLNGQARP VPGDPLPLGL SRGSRLSRFQ QIDFFQRFMA MPFIPSFAAN RGFLLQRVLS LPIVENWSVM LLGQLNVQRF
101: LSSLRKNKTK HLPDPSWLQS IRRNFIQKSF YALGFCSELF LTPDDTLIIS LDAYGDEKVP QKRAVLHHKA SMYEL
101: LSSLRKNKTK HLPDPSWLQS IRRNFIQKSF YALGFCSELF LTPDDTLIIS LDAYGDEKVP QKRAVLHHKA SMYEL
001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET
Arabidopsis Description
TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.