Factsheet for Zm00001d040259_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus

Predictor Summary:

extracellular 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86609	Sorghum	cytosol	88.64	93.46
TraesCS3D01G176700.1	Wheat	cytosol	76.86	80.35
TraesCS3A01G164900.1	Wheat	cytosol	76.86	80.35
TraesCS3B01G200800.3	Wheat	cytosol	75.83	79.27
Os01t0251000-01	Rice	plastid	75.0	78.4
HORVU3Hr1G034170.2	Barley	cytosol	76.86	73.81
GSMUA_Achr8P10930_001	Banana	cytosol	58.68	59.17
CDY72372	Canola	cytosol, extracellular	9.09	57.89
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	51.24	53.33
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	24.59	48.57
Solyc01g057040.2.1	Tomato	plastid	30.37	47.27
KRH12186	Soybean	cytosol, golgi, nucleus	45.66	47.22
AT3G06960.1	Thale cress	cytosol	46.07	46.56
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	44.42	45.94
KRH37207	Soybean	mitochondrion	34.3	44.27
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	14.26	39.43
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	13.64	37.71

Protein Annotations

EntrezGene:103649949	MapMan:35.1	UniProt:A0A1D6MPH5	InterPro:DUF3769	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0008150	GO:GO:0008289	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707
GO:GO:0009941	GO:GO:0016020	GO:GO:0034196	GO:GO:0042803	GO:GO:0070300	GO:GO:1990052
ProteinID:ONM30950.1	PFAM:PF12600	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	UniParc:UPI0008456109	EnsemblPlantsGene:Zm00001d040259
EnsemblPlants:Zm00001d040259_P001	EnsemblPlants:Zm00001d040259_T001	SEG:seg	:	:	:

Description

Protein TRIGALACTOSYLDIACYLGLYCEROL 4 chloroplastic

Coordinates

chr3:+:34373666..34378966

Molecular Weight (calculated)

54377.2 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.185

Length

484 amino acids

Sequence
(BLAST)

001: MLLRRMRWMS EGDGRWELDA ETPVTMEGTA RPVPGDPLPL GLSRGYRITR PKQLDFFHRF MASPLVPTFS AMRDGLSVNH AHIFYMTDNW SSTILEKINV
101: KKLVSVVKEK LANRQEEASW TKDLKNHLHD VMSLGVGTEI LITPDTTLLL ELFDIKKGNR GKAIFHHEAK NLDALNLFGI QTPLYLLQLP HHNITFQASW
201: PGLFVDKKGT YWDVPLSLSA DLASVGSSSG LSYHLLLQQN SGEPKCFGGD ETDDVPTALL PGLCAKVAIS MKKSIDAWRK KEDKLKKVQP YDVFLSDSHV
301: SLTGIVGGVA SGYLGDCSRR VAIRDETHKS NAFIMFDERN KRAAFADLFA SVTFTAQYGN FQRLFLDLTK ASARFDITSG SLFLCGASRL AQDFFFSRRP
401: DVETFCDICP DVTVSFQQQI VGPFSFRVES SVAIDPRSQD HFVRVDDPIF AIDWALKVLG SAKATAWYSP KHQEAMMELR FYET

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.