Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040299.1-P | Field mustard | cytosol, nucleus, peroxisome | 79.75 | 81.62 |
| CDY72372 | Canola | cytosol, extracellular | 12.11 | 76.32 |
| VIT_05s0020g00870.t01 | Wine grape | cytosol, mitochondrion, peroxisome | 55.95 | 57.63 |
| KRH12186 | Soybean | cytosol, golgi, nucleus | 55.11 | 56.41 |
| KRH37207 | Soybean | mitochondrion | 42.38 | 54.13 |
| PGSC0003DMT400051484 | Potato | cytosol, extracellular, nucleus | 26.72 | 52.24 |
| PGSC0003DMT400051483 | Potato | endoplasmic reticulum, mitochondrion, nucleus | 18.79 | 51.43 |
| Solyc01g057040.2.1 | Tomato | plastid | 32.78 | 50.48 |
| Os01t0251000-01 | Rice | plastid | 47.18 | 48.81 |
| GSMUA_Achr8P10930_001 | Banana | cytosol | 48.64 | 48.54 |
| TraesCS3D01G176700.1 | Wheat | cytosol | 46.56 | 48.16 |
| TraesCS3A01G164900.1 | Wheat | cytosol | 46.35 | 47.95 |
| TraesCS3B01G200800.3 | Wheat | cytosol | 46.35 | 47.95 |
| Zm00001d040259_P001 | Maize | cytosol, extracellular, nucleus | 46.56 | 46.07 |
| OQU86609 | Sorghum | cytosol | 43.42 | 45.32 |
| HORVU3Hr1G034170.2 | Barley | cytosol | 46.14 | 43.85 |
| AT2G44640.1 | Thale cress | cytosol | 33.19 | 35.26 |
Protein Annotations
| MapMan:5.8.2.3 | EntrezGene:819881 | ProteinID:AAF27000.1 | ProteinID:AEE74480.1 | EMBL:AF367275 | ArrayExpress:AT3G06960 |
| EnsemblPlantsGene:AT3G06960 | RefSeq:AT3G06960 | TAIR:AT3G06960 | RefSeq:AT3G06960-TAIR-G | EnsemblPlants:AT3G06960.1 | TAIR:AT3G06960.1 |
| EMBL:AY059159 | Unigene:At.18751 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0006869 |
| GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009507 | GO:GO:0009527 | GO:GO:0009536 | GO:GO:0009707 |
| GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034196 | GO:GO:0042803 | GO:GO:0070300 |
| GO:GO:1990052 | RefSeq:NP_566296.1 | Symbol:PDE320 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR34954 | PANTHER:PTHR34954:SF1 |
| UniProt:Q9M903 | UniParc:UPI00000A6069 | SEG:seg | : | : | : |
Description
TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
Coordinates
chr3:-:2194208..2196581
Molecular Weight (calculated)
52825.1 Da
IEP (calculated)
6.846
GRAVY (calculated)
-0.125
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.