Factsheet for PGSC0003DMT400051483

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	96.57	96.57
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	64.0	24.09
KRH12186	Soybean	cytosol, golgi, nucleus	55.43	20.73
AT3G06960.1	Thale cress	cytosol	51.43	18.79
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	49.71	18.59
TraesCS3D01G176700.1	Wheat	cytosol	43.43	16.41
TraesCS3B01G200800.3	Wheat	cytosol	43.43	16.41
TraesCS3A01G164900.1	Wheat	cytosol	43.43	16.41
Os01t0251000-01	Rice	plastid	42.86	16.2
HORVU3Hr1G034170.2	Barley	cytosol	42.86	14.88
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	39.43	14.26
GSMUA_Achr8P10930_001	Banana	cytosol	38.86	14.17
PGSC0003DMT400004238	Potato	cytosol	35.43	13.54
OQU86609	Sorghum	cytosol	33.14	12.64
KRH37207	Soybean	mitochondrion	25.71	12.0
PGSC0003DMT400004237	Potato	cytosol	3.43	2.04
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	1.14	0.82
CDY72372	Canola	cytosol, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400051483	EnsemblPlantsGene:PGSC0003DMG401019999	ncoils:Coil	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	PGSC:PGSC0003DMG401019999
SEG:seg	UniParc:UPI00029590D1	UniProt:M1BRT7	MapMan:35.1	:	:

Description

PDE320 [Source:PGSC_GENE;Acc:PGSC0003DMG401019999]

Coordinates

chr1:+:32085195..32086531

Molecular Weight (calculated)

19987.4 Da

IEP (calculated)

10.614

GRAVY (calculated)

-0.157

Length

175 amino acids

Sequence
(BLAST)

001: MKKLRWAMDS GGFWELDLST PITLNGQARP VPGDPLPLGL SRGSRLSRFQ QIDFFQRFMA MPFVPSFAAN RGLLLQRVLS LPIAENWSAM LLGQLNVQRF
101: VSSLRKNKTK HLPDSSWLQS IRRNFIQKSF YALGFCSELF LTPDDTLIIS LDAYGDEKVP QKRAVLHHKA SMYEL

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.