Factsheet for TraesCS3B01G200800.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G176700.1	Wheat	cytosol	97.19	97.19
TraesCS3A01G164900.1	Wheat	cytosol	96.98	96.98
HORVU3Hr1G034170.2	Barley	cytosol	96.11	88.29
Os01t0251000-01	Rice	plastid	86.18	86.18
OQU86609	Sorghum	cytosol	76.03	76.69
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	79.27	75.83
GSMUA_Achr8P10930_001	Banana	cytosol	63.28	61.04
CDY72372	Canola	cytosol, extracellular	9.5	57.89
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	54.0	53.76
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	25.7	48.57
KRH12186	Soybean	cytosol, golgi, nucleus	48.6	48.08
Solyc01g057040.2.1	Tomato	plastid	31.75	47.27
AT3G06960.1	Thale cress	cytosol	47.95	46.35
KRH37207	Soybean	mitochondrion	36.93	45.6
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	45.57	45.09
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	16.41	43.43
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	15.55	41.14

Protein Annotations

MapMan:5.8.2.3	InterPro:DUF3769	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0008150
GO:GO:0008289	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009941	GO:GO:0016020
GO:GO:0034196	GO:GO:0042803	GO:GO:0070300	GO:GO:1990052	PFAM:PF12600	PANTHER:PTHR34954
PANTHER:PTHR34954:SF1	EnsemblPlantsGene:TraesCS3B01G200800	EnsemblPlants:TraesCS3B01G200800.3	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:229300299..229305483

Molecular Weight (calculated)

51605.9 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.104

Length

463 amino acids

Sequence
(BLAST)

001: MLRQMRWLTD REGRWELDVE SPATMEGTAR PVPGDPLPLG LSRGPRVTRT KQLDFFHRFM ASPLVPSFSA SRAGLSLHHA HLLHLAHNWS FTILEQLHVQ
101: KLVTAVKEKL SNHRQGVPWS NDLERHLHDV ISLGVGTEFL ITPDTALLLE LYNINKGDRG KAIIHHKLPQ QNITLAASWP GLFVDKQGVY WDVPLSLSAD
201: LASVGSSSGL SYHLLLQQNS GEPKCFGGDE TNDVPLALLP GLCAKAAISI KRSIDAWRKK EDKLKMVQPY DAFLSDPHVS FTGIVGAVAS GSLGDCSKRI
301: IVPDEMRKSN AFRVFHERNK FAAFADLFAS VTFTAQHGNF QRLFLDLTRV SARLDISSGS LFLRGASRLA QDFFFSRRPD LETFCDVCPD VIVSLQQQIV
401: GPFSFRVESS VAIDPRSPDH FVRVGDSVFA IDWALKVLGS AKATAWYSPK HQEAMVELRF FEV

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.