CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	61.84	19.18
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	16.24
Solyc01g057040.2.1	Tomato	plastid	63.16	15.43
KRH37207	Soybean	mitochondrion	61.84	12.53
AT3G06960.1	Thale cress	cytosol	76.32	12.11
KRH12186	Soybean	cytosol, golgi, nucleus	64.47	10.47
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	61.84	10.11
Os01t0251000-01	Rice	plastid	60.53	9.94
OQU86609	Sorghum	cytosol	57.89	9.59
TraesCS3A01G164900.1	Wheat	cytosol	57.89	9.5
TraesCS3B01G200800.3	Wheat	cytosol	57.89	9.5
TraesCS3D01G176700.1	Wheat	cytosol	57.89	9.5
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	57.89	9.09
GSMUA_Achr8P10930_001	Banana	cytosol	56.58	8.96
HORVU3Hr1G034170.2	Barley	cytosol	59.21	8.93
CDY48243	Canola	plastid	34.21	5.64
CDX83423	Canola	cytosol	34.21	5.64
CDX74674	Canola	plastid	34.21	5.62
CDX95608	Canola	cytosol	31.58	5.35
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY72372	EnsemblPlantsGene:GSBRNA2T00028180001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009536	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	ProteinID:CDY72372	ProteinID:CDY72372.1	UniParc:UPI0004EEA670
UniProt:A0A078K3B1	MapMan:35.1	:	:	:	:

Description

BnaAnng40880DBnaAnng40880D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K3B1]

Coordinates

chrLK050586:-:1713..2156

Molecular Weight (calculated)

8560.3 Da

IEP (calculated)

7.354

GRAVY (calculated)

0.025

Length

76 amino acids

Sequence
(BLAST)

1: CPEVAVSLQQ QIVGPFSLRA ESGIRIDLKN GSNPMTIHNT VFAVEYALQV LASAKAVAWY SPKQREFMIE LRFYET

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.