Factsheet for VIT_05s0020g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12186	Soybean	cytosol, golgi, nucleus	64.52	64.1
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	24.09	64.0
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	23.44	62.29
KRH37207	Soybean	mitochondrion	50.11	62.13
CDY72372	Canola	cytosol, extracellular	10.11	61.84
PGSC0003DMT400051484	Potato	cytosol, extracellular, nucleus	30.54	57.96
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	56.99	56.62
AT3G06960.1	Thale cress	cytosol	57.63	55.95
TraesCS3D01G176700.1	Wheat	cytosol	54.41	54.64
Os01t0251000-01	Rice	plastid	54.19	54.43
TraesCS3A01G164900.1	Wheat	cytosol	54.19	54.43
TraesCS3B01G200800.3	Wheat	cytosol	53.76	54.0
GSMUA_Achr8P10930_001	Banana	cytosol	55.05	53.33
OQU86609	Sorghum	cytosol	50.75	51.42
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	53.33	51.24
HORVU3Hr1G034170.2	Barley	cytosol	54.41	50.2
VIT_15s0021g00530.t01	Wine grape	cytosol	36.99	37.07

Protein Annotations

ArrayExpress:VIT_05s0020g00870	EMBL:AM459930	EMBL:FN595749	EnsemblPlants:VIT_05s0020g00870.t01	EnsemblPlantsGene:VIT_05s0020g00870	EntrezGene:100853208
EntrezGene:LOC100853208	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	ProteinID:CAN81147	ProteinID:CAN81147.1	ProteinID:CBI26018
ProteinID:CBI26018.3	RefSeq:XP_003631965	RefSeq:XP_003631965.1	RefSeq:XP_019075782.1	RefSeq:XP_019075783.1	unigene:Vvi.22197
UniParc:UPI00015C7792	UniProt:D7T697	wikigene:100853208	wikigene:LOC100853208	MapMan:5.8.2.3	:

Description

No Description!

Coordinates

chr5:-:2697714..2700931

Molecular Weight (calculated)

51897.2 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.061

Length

465 amino acids

Sequence
(BLAST)

001: MKKLRWAMDG GFWELDMSTA TTLDGVARAV PDDPLPLGLS RGTRLSRPMQ IDFFQRFMSM PFVPSSSIST HGFSLQRGFT FPFTENWFAS LLGQFNFQKF
101: VSSVKEGRLL QPSESSWLQG IGRRFSDKSL YALGLSSELL ITPDDTLLVS LEAYGDKKVP RKKAVFLHKF PNHNLMVEAV WPGLFVDKFG TYWDVPLSMA
201: IDLASVASDS GASYHLSVHH NTGTPKQFDG NQTHEVPATL LPGLCAKGAF ALKKNIDLWR SKAQKLKMVQ PFDIFLSNPH ISFSGIIGAA GTACLGDNSV
301: RVQVEDESHG FKGFKLHLPR VKSALVADIF ASVAFTAQHG NFQRLFLDLT RFYARLDFPS GSKFLAGTTR LTQDLYNSQQ PSLEAFQAIC PTATLSLQQQ
401: IVGPFSFRID SGVAVNLKNR EWHIDVDEPV FAIEYALQVL GSAKAIAWYS PKHEEFMVEL RFFEI

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.