Factsheet for PGSC0003DMT400051484

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72372	Canola	cytosol, extracellular	19.18	61.84
KRH37207	Soybean	mitochondrion	52.24	34.13
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	57.96	30.54
KRH12186	Soybean	cytosol, golgi, nucleus	53.88	28.21
GSMUA_Achr8P10930_001	Banana	cytosol	55.1	28.12
Bra040299.1-P	Field mustard	cytosol, nucleus, peroxisome	53.06	27.78
AT3G06960.1	Thale cress	cytosol	52.24	26.72
OQU86609	Sorghum	cytosol	48.16	25.71
TraesCS3D01G176700.1	Wheat	cytosol	48.57	25.7
TraesCS3B01G200800.3	Wheat	cytosol	48.57	25.7
TraesCS3A01G164900.1	Wheat	cytosol	48.57	25.7
PGSC0003DMT400004237	Potato	cytosol	30.61	25.51
Os01t0251000-01	Rice	plastid	48.16	25.49
Zm00001d040259_P001	Maize	cytosol, extracellular, nucleus	48.57	24.59
HORVU3Hr1G034170.2	Barley	cytosol	48.98	23.81
PGSC0003DMT400004238	Potato	cytosol	31.02	16.59
Solyc01g057020.2.1	Tomato	endoplasmic reticulum, mitochondrion, nucleus	0.82	1.14
PGSC0003DMT400051483	Potato	endoplasmic reticulum, mitochondrion, nucleus	0.82	1.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400051484	EnsemblPlantsGene:PGSC0003DMG402019999	PANTHER:PTHR34954	PANTHER:PTHR34954:SF1	PGSC:PGSC0003DMG402019999	SEG:seg
UniParc:UPI0002959AE5	UniProt:M1BRT8	MapMan:35.1	:	:	:

Description

PDE320 [Source:PGSC_GENE;Acc:PGSC0003DMG402019999]

Coordinates

chr1:+:32091813..32096489

Molecular Weight (calculated)

27033.0 Da

IEP (calculated)

5.241

GRAVY (calculated)

0.003

Length

245 amino acids

Sequence
(BLAST)

001: MEAAWPGLFV DGNGSYWDVP FSLALDLAST TLDSGASYHL FFNNCAGSPK QYEGQHSDEL PPPAALLPGA VFSAYLGENS MKRQQSCSLR GLKDFDLRAQ
101: VANCAVSVDS FATASLTAQH GNFQRLLLDL TRVHTNFDFP SGSKLLSGIT SVACSLYNSQ VPNVEALQAI CPRASLSFQQ QIIGPFSFRV DSEIAIDLKK
201: DWYLSVKNPI FAIEHALQVL WSAKAVAWYS PMQREFMVEL RFFES

Best Arabidopsis Sequence Match ( AT3G06960.1 )
(BLAST)

001: MNRMRWVGEG DIWDLDMSTP VTLEGTARAV PDDPLPLGLS RGTRLSRPKQ VEFFHRFMAS PLIPSFSPIR PNTGDGGGGG FSLQRVLTLP FSNNWLVSLL
101: GQFDVQRFVT EIDKTKAFGR GSSSTVASRL NTIGKHLKDK SLYALGFCSE FLLSPDDTLL LSYDAYKGDL DKNPRAKAIF NHEFPLHNLT AEAVWPGLFV
201: DKHGEYWDVP LSMAIDLASL PAESGPSYHL CLHHNSGSPK KLHSDTMEVP PPSLLPGLSL KSAVSYRTNM DLWRGTTPKL ETCKPYDVFL SSPHVAVSGI
301: IGSVMTAAFG ENSIRSKFEN DSEGVGGFSL HFPSVNSGFM ADALGRASLT AQYGNFQKFF FDLTRFHARL DFPHGLRFLT GATSVAQDLL NSRQPSLEAF
401: QKICPEVLVS LQQQIVGPFS FKVESGIEID LRNGANPVTV DKTVFAIEYA LQVLLSAKAV VSYSPKQNEF MVELRFFET

Arabidopsis Description

TGD4Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M903]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.