Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088600.2.1 | Tomato | cytosol, nucleus, plastid | 95.85 | 95.85 |
| PGSC0003DMT400004237 | Potato | cytosol | 58.95 | 91.84 |
| VIT_15s0021g00530.t01 | Wine grape | cytosol | 69.87 | 68.97 |
| KRH66391 | Soybean | nucleus | 57.86 | 57.11 |
| AT2G44640.1 | Thale cress | cytosol | 55.24 | 56.1 |
| Bra000357.1-P | Field mustard | cytosol | 56.33 | 55.97 |
| CDX83423 | Canola | cytosol | 55.68 | 55.31 |
| GSMUA_Achr1P24040_001 | Banana | cytosol | 55.68 | 55.31 |
| Bra004852.1-P | Field mustard | plastid | 55.68 | 55.08 |
| CDX74674 | Canola | plastid | 55.68 | 55.08 |
| CDY48243 | Canola | plastid | 55.24 | 54.88 |
| KRH48903 | Soybean | cytosol | 55.24 | 52.71 |
| CDX95608 | Canola | cytosol | 50.0 | 51.0 |
| PGSC0003DMT400051483 | Potato | endoplasmic reticulum, mitochondrion, nucleus | 13.54 | 35.43 |
| PGSC0003DMT400051484 | Potato | cytosol, extracellular, nucleus | 16.59 | 31.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004238 | EnsemblPlantsGene:PGSC0003DMG401001686 | EntrezGene:102586180 | PANTHER:PTHR34954 | PANTHER:PTHR34954:SF2 | PGSC:PGSC0003DMG401001686 |
| RefSeq:XP_006354638.1 | SEG:seg | UniParc:UPI0002959B84 | UniProt:M0ZN42 | MapMan:35.1 | : |
Description
PDE320 [Source:PGSC_GENE;Acc:PGSC0003DMG401001686]
Coordinates
chr1:+:68429704..68436264
Molecular Weight (calculated)
51168.4 Da
IEP (calculated)
9.614
GRAVY (calculated)
-0.293
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MANMRTAMDA AFWDLNISTP RTLDGTARSI PGEPIPLDRS TASKALRIQQ LSLLGNGFPL GIIPSYSPTS RKELGSFALQ SLLFKAATSN WWLGFTGQFR
101: PKKLVSDIKA ELSSVDEWEL PILKDIGKHF LEKSLYAFGL CSQLSLTPSS SLLLSTEKHG EKKGRRLRAM LFHKLPEHDV TLEAAWPELF LDHKGRYWEV
201: PESISLDCSS LVSEDGLRYR FGLHKNGGHP RAVDNITDEP PLSLMQGICG KAAASYEKSK DFWRIKEKKE DIIIETDKGR FYRPSYDIRL REPHAAVSGI
301: IGGTLEAWLN NGSSSSSASR HRSPFGVDLF GSLCYTFQHG KFKESFGDLT RVDARLDVSS ALGLAKQVSK VIRKASSNNT RDVLSSPRLE LILQQQVAGP
401: MVFRVDSKFS LNSPTGVQLE DFVCSLNYSL KLLQSGKVVA WYSPKRKEGM IELRLFEF
101: PKKLVSDIKA ELSSVDEWEL PILKDIGKHF LEKSLYAFGL CSQLSLTPSS SLLLSTEKHG EKKGRRLRAM LFHKLPEHDV TLEAAWPELF LDHKGRYWEV
201: PESISLDCSS LVSEDGLRYR FGLHKNGGHP RAVDNITDEP PLSLMQGICG KAAASYEKSK DFWRIKEKKE DIIIETDKGR FYRPSYDIRL REPHAAVSGI
301: IGGTLEAWLN NGSSSSSASR HRSPFGVDLF GSLCYTFQHG KFKESFGDLT RVDARLDVSS ALGLAKQVSK VIRKASSNNT RDVLSSPRLE LILQQQVAGP
401: MVFRVDSKFS LNSPTGVQLE DFVCSLNYSL KLLQSGKVVA WYSPKRKEGM IELRLFEF
001: MANLNSAIDS VFWDQNVSSP QTLEGTARSV PGEPFPLDGA RASRSHRIQQ LSLLREGFPL GIIPSLAPAS DKRLGSFSLN SLLLSPSSNN WWLGLVGQFK
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80503]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.