Factsheet for GSMUA_Achr1P24040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088600.2.1	Tomato	cytosol, nucleus, plastid	55.53	55.9
VIT_15s0021g00530.t01	Wine grape	cytosol	56.18	55.82
PGSC0003DMT400004238	Potato	cytosol	55.31	55.68
AT2G44640.1	Thale cress	cytosol	51.84	52.99
PGSC0003DMT400004237	Potato	cytosol	33.19	52.04
Bra000357.1-P	Field mustard	cytosol	50.98	50.98
CDY48243	Canola	plastid	50.76	50.76
KRH66391	Soybean	nucleus	50.76	50.43
Bra004852.1-P	Field mustard	plastid	50.54	50.32
CDX74674	Canola	plastid	50.11	49.89
CDX83423	Canola	cytosol	49.67	49.67
KRH48903	Soybean	cytosol	50.11	48.12
CDX95608	Canola	cytosol	44.69	45.88
GSMUA_Achr8P10930_001	Banana	cytosol	37.31	35.83

Protein Annotations

EnsemblPlants:GSMUA_Achr1P24040_001	EnsemblPlants:GSMUA_Achr1T24040_001	EnsemblPlantsGene:GSMUA_Achr1G24040_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	GO:GO:0016020	PANTHER:PTHR34954	PANTHER:PTHR34954:SF2	UniParc:UPI00029567E5	UniProt:M0S2L1
MapMan:5.8.2.3	:	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G24040_001]

Coordinates

chr1:+:18462526..18467667

Molecular Weight (calculated)

51642.1 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.230

Length

461 amino acids

Sequence
(BLAST)

001: MTSLRLAMDT AFWDLNVSSA QNLEGTARAV PGEAAPLGMA RASRLLRPQQ LSFLSRAFPL GLVPSFAPTP RKDLGSFAIQ SLLLGPSSDR WWMGLVGQFR
101: PRKLISNIKK EVTMGDELEL PQFKDVAKHF LDKSLYALGL FSQISLTPET SLLFNVERHG DKTGQRAKAM LLHELPSHDV TIEAAWPELF LDSKGNYWDV
201: PTSVSLDVTS LIPDTGLWYR FGLHKNSGQP EARNSSSTDI PLTLLPGVCA KAAVSYEKSM DFWREQEKST RARNLVKKPA WISSYDERLE EPHATISGII
301: GGTYAAWFGD GNISNPKRRN QFHADFFGSL CYTIQHGKFK KDFNDLRRIS ARLDICSASA FMKGVSHLIF DTTKRQVDTE FNPLATPRLN VILQQQVAGP
401: IVFSVDSRVS LVSPSGKHMP CVDDVMFGLS YSFRKLKSGK ILAWFSPKRK ESMVELRLFE F

Best Arabidopsis Sequence Match ( AT2G44640.1 )
(BLAST)

001: MANLNSAIDS VFWDQNVSSP QTLEGTARSV PGEPFPLDGA RASRSHRIQQ LSLLREGFPL GIIPSLAPAS DKRLGSFSLN SLLLSPSSNN WWLGLVGQFK
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80503]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.