Factsheet for VIT_15s0021g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088600.2.1	Tomato	cytosol, nucleus, plastid	69.18	70.09
PGSC0003DMT400004238	Potato	cytosol	68.97	69.87
PGSC0003DMT400004237	Potato	cytosol	42.03	66.33
AT2G44640.1	Thale cress	cytosol	57.97	59.65
Bra004852.1-P	Field mustard	plastid	58.19	58.32
Bra000357.1-P	Field mustard	cytosol	57.54	57.92
CDX83423	Canola	cytosol	57.33	57.7
CDY48243	Canola	plastid	57.33	57.7
CDX74674	Canola	plastid	57.11	57.24
KRH66391	Soybean	nucleus	56.25	56.25
GSMUA_Achr1P24040_001	Banana	cytosol	55.82	56.18
CDX95608	Canola	cytosol	52.8	54.57
KRH48903	Soybean	cytosol	54.96	53.12
VIT_05s0020g00870.t01	Wine grape	cytosol, mitochondrion, peroxisome	37.07	36.99

Protein Annotations

EntrezGene:100256535	wikigene:100256535	MapMan:35.1	ProteinID:CBI16728	ProteinID:CBI16728.3	UniProt:D7SM50
InterPro:DUF3769	EMBL:FN594952	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0016020	EntrezGene:LOC100256535	wikigene:LOC100256535	PFAM:PF12600	PANTHER:PTHR34954	PANTHER:PTHR34954:SF2
TIGR:TC64877	TIGR:TC69442	UniParc:UPI0001984C1D	ArrayExpress:VIT_15s0021g00530	EnsemblPlantsGene:VIT_15s0021g00530	EnsemblPlants:VIT_15s0021g00530.t01
unigene:Vvi.8189	RefSeq:XP_002265990	RefSeq:XP_002265990.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:10173086..10188188

Molecular Weight (calculated)

51441.3 Da

IEP (calculated)

9.844

GRAVY (calculated)

-0.284

Length

464 amino acids

Sequence
(BLAST)

001: MANLRTAMDA AFWDLDISSP QTLHGAARAV PGDPFPLEGA RASRALRVQQ LSFLGNGFPL GIIPSFSPTS QKDLGSFSLQ SLFLRPSTSN WWLGLTGQFR
101: PKKLISSIKA DLSAVDEWEL STFKEVAKHF IDKSLFSFGL CSQLSLTSAS SLMVSTEQHG EKKGRRNRVM LFHQLPFHDI TLEAAWPELF IDHKGRYWEL
201: PESISLGLSS LVSESGLRYR FGIHKNGGHP QSVNAINDEA PSALMPGLCA KAAFSYEKSR DLWRQREKQE DGIVKTERGL VWRPSYDIRL REPHAAISGI
301: IGGTCEAWFG GSREHGDGSS ADAKKRSPFG ADLFASGCCT FQHGQFRKRY GDLTRVDARL NICSASALAK RVSNLFSSSV NGAKDPLSSP RLNLIFQQQV
401: AGPIVFRVDS KLLLDSSGGR AGPQLEDFTY SLNYSLRLLR SGKVVAWYSP KRKEGMIELR LFEF

Best Arabidopsis Sequence Match ( AT2G44640.1 )
(BLAST)

001: MANLNSAIDS VFWDQNVSSP QTLEGTARSV PGEPFPLDGA RASRSHRIQQ LSLLREGFPL GIIPSLAPAS DKRLGSFSLN SLLLSPSSNN WWLGLVGQFK
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80503]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.