Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74674 | Canola | plastid | 96.33 | 96.33 |
| Bra000357.1-P | Field mustard | cytosol | 85.96 | 86.33 |
| AT2G44640.1 | Thale cress | cytosol | 76.46 | 78.49 |
| VIT_15s0021g00530.t01 | Wine grape | cytosol | 58.32 | 58.19 |
| PGSC0003DMT400004237 | Potato | cytosol | 35.64 | 56.12 |
| Solyc01g088600.2.1 | Tomato | cytosol, nucleus, plastid | 55.29 | 55.9 |
| PGSC0003DMT400004238 | Potato | cytosol | 55.08 | 55.68 |
| KRH66391 | Soybean | nucleus | 55.29 | 55.17 |
| KRH48903 | Soybean | cytosol | 54.43 | 52.5 |
| GSMUA_Achr1P24040_001 | Banana | cytosol | 50.32 | 50.54 |
| Bra040299.1-P | Field mustard | cytosol, nucleus, peroxisome | 32.18 | 31.84 |
Protein Annotations
Description
AT2G44640 (E=2e-192) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PDE320 (PIGMENT DEFECTIVE 320) (TAIR:AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Coordinates
chrA05:+:2137601..2139679
Molecular Weight (calculated)
51071.4 Da
IEP (calculated)
7.680
GRAVY (calculated)
-0.331
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLSSAIDA VFWDHNLSSP QTLEGTARSV PGEPFPVDGA RASRSHRIQQ LSLLREGFPL GVIPAFAPSS DKRLGSFSLN SLLLCPSSSN WWAGLVGQFK
101: PKKLFADIKT SISKAEEWDL QLFKDTTKHI VDKSLYSVGL WTQIALGSSS SLLLSAERLG DKEGIRKKLM FVHPLEKHDL TVEAAWPDLF LDHKGRFWDV
201: PESLNFDVSS LAPETTGLHY RFAVHKSKGH PQQVNAAETN GDAPPASLFP GLCAKAAVSY KASKDLWRPK EKDDNTKEEE EDDEDESPVF LPYDIRLKEP
301: HAAVSGIVGS TLAAWITGRD TKRRSPITAD AFGSACCTFQ KGRFSKLYGD LTRVDARVDV SSASALAKRI FHAIKRSSGS NKTDDDASGS PRLSLIFQQQ
401: VAGPIVFKVD SQFEVGAGKY GAQMEDLIYS LNYSLRLLES GKVVAWYSPK RKEGMVELRV FEF
101: PKKLFADIKT SISKAEEWDL QLFKDTTKHI VDKSLYSVGL WTQIALGSSS SLLLSAERLG DKEGIRKKLM FVHPLEKHDL TVEAAWPDLF LDHKGRFWDV
201: PESLNFDVSS LAPETTGLHY RFAVHKSKGH PQQVNAAETN GDAPPASLFP GLCAKAAVSY KASKDLWRPK EKDDNTKEEE EDDEDESPVF LPYDIRLKEP
301: HAAVSGIVGS TLAAWITGRD TKRRSPITAD AFGSACCTFQ KGRFSKLYGD LTRVDARVDV SSASALAKRI FHAIKRSSGS NKTDDDASGS PRLSLIFQQQ
401: VAGPIVFKVD SQFEVGAGKY GAQMEDLIYS LNYSLRLLES GKVVAWYSPK RKEGMVELRV FEF
001: MANLNSAIDS VFWDQNVSSP QTLEGTARSV PGEPFPLDGA RASRSHRIQQ LSLLREGFPL GIIPSLAPAS DKRLGSFSLN SLLLSPSSNN WWLGLVGQFK
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F
101: PKKLFADIKA DISNAEEWDL QVVKDTAKHI VDKSLYSIGL WTQIALGTSS SLLLSTERLG DKNGLRNKLM LVHPLEKHDL TVEAAWPDLF LDNKGRFWDV
201: PESLNVDVSS LVPESGVRYR FGLHKSRGNP QPVNAAGVES GSDAPTSLMP GLCAKAAVSY KVNRDLWRPQ EKEGNTEEED KPVFLPYDLR LKEPHAAISG
301: IVGSSLAAWI TGRGMLVNGK KRSPISADVF GSACYTFQKG RFSKLYGDLT RVDARVDLPS AFALAKKLFH ASSNNSDDTL WSPRLNLIFQ QQVAGPIVFK
401: VDSQFQVGAA RMEDVIYSLN YSLRLLESGK IVAWYSPKRK EGMIELRVFE F
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80503]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.