Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g057880.2.1 | Tomato | nucleus | 51.71 | 61.68 |
| VIT_18s0001g01700.t01 | Wine grape | nucleus | 30.87 | 49.33 |
| Solyc07g006060.2.1 | Tomato | nucleus | 5.77 | 39.02 |
| Solyc07g008580.1.1 | Tomato | nucleus | 6.01 | 35.97 |
| Solyc09g060000.1.1 | Tomato | nucleus | 5.11 | 32.32 |
| KRH53306 | Soybean | nucleus | 38.98 | 31.81 |
| CDX88357 | Canola | nucleus | 30.81 | 30.96 |
| Bra015678.1-P | Field mustard | nucleus | 30.69 | 30.84 |
| CDX87527 | Canola | nucleus | 30.69 | 30.84 |
| KRH64610 | Soybean | nucleus | 38.56 | 30.81 |
| Solyc07g008500.1.1 | Tomato | nucleus | 5.17 | 29.86 |
| AT1G77300.1 | Thale cress | nucleus | 30.99 | 28.59 |
| Solyc07g008460.2.1 | Tomato | nucleus | 7.75 | 28.54 |
| GSMUA_Achr9P08570_001 | Banana | nucleus | 32.67 | 26.85 |
| Solyc01g006220.2.1 | Tomato | endoplasmic reticulum | 6.79 | 25.06 |
| Solyc12g100290.1.1 | Tomato | nucleus | 6.43 | 24.65 |
| TraesCS2B01G015500.1 | Wheat | nucleus | 25.83 | 23.96 |
| OQU85110 | Sorghum | nucleus | 27.27 | 23.84 |
| Zm00001d016804_P002 | Maize | nucleus | 25.59 | 23.73 |
| TraesCS2A01G005000.1 | Wheat | nucleus | 25.59 | 23.54 |
| TraesCS2D01G007100.1 | Wheat | nucleus | 25.77 | 23.42 |
| HORVU2Hr1G000940.11 | Barley | nucleus | 25.29 | 23.23 |
| Solyc02g093200.2.1 | Tomato | endoplasmic reticulum, vacuole | 4.38 | 15.77 |
| Solyc03g112690.1.1 | Tomato | nucleus | 4.68 | 12.11 |
| Solyc09g098260.1.1 | Tomato | nucleus | 4.02 | 11.39 |
| Solyc01g079390.2.1 | Tomato | nucleus | 5.17 | 10.37 |
| Solyc03g044380.2.1 | Tomato | nucleus | 5.59 | 10.1 |
| Solyc03g083410.2.1 | Tomato | mitochondrion, nucleus | 5.41 | 9.17 |
| Solyc01g095890.2.1 | Tomato | nucleus | 5.77 | 9.16 |
| Solyc01g006880.2.1 | Tomato | nucleus | 5.53 | 5.76 |
| Solyc02g093190.2.1 | Tomato | nucleus | 0.96 | 4.75 |
| Solyc09g098250.2.1 | Tomato | nucleus | 1.62 | 3.66 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.4 | Gene3D:2.170.270.10 | Gene3D:3.30.40.100 | InterPro:AWS_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0008270 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0018024 | GO:GO:0019538 |
| GO:GO:0032259 | GO:GO:0034968 | InterPro:IPR001214 | InterPro:IPR003616 | InterPro:IPR006560 | InterPro:IPR011124 |
| UniProt:K4C6I0 | PFAM:PF00856 | PFAM:PF07496 | PFscan:PS50280 | PFscan:PS50868 | PFscan:PS51050 |
| PFscan:PS51215 | PANTHER:PTHR22884 | PANTHER:PTHR22884:SF466 | InterPro:Post-SET_dom | InterPro:SET_dom | SMART:SM00317 |
| SMART:SM00570 | SUPFAM:SSF82199 | EnsemblPlantsGene:Solyc06g059960.2 | EnsemblPlants:Solyc06g059960.2.1 | UniParc:UPI0002765F5D | InterPro:Znf_CW |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:37866211..37888204
Molecular Weight (calculated)
183644.0 Da
IEP (calculated)
7.795
GRAVY (calculated)
-0.645
Length
1665 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSQISRADN VCDFGQSTYA MDPNCSTENL SVSLQSPQPF EIRSADVSQR AATLDVSGTD VLENVSDSIS ITELSQKEDD KGKDTVETDN ASESEYPDNA
0101: CIAPRRRSGR NSKLSQSLAT VPARKGRRIA IKKTSIDFSS LQITRKRRSY FSKQARSSAW GLLENTVQYL EHNVRLEIAL GKQKNLRIAK KGGSRNEKHG
0201: KKQIDRKPRK SKGKSSIPRG PISLKVKFGS HCLMDGIPVI DNDTNKNSNA REELKEMTKV ASEVDNRIGE EVLSVQFHGC NGNLDNDHVS LSEGCQPGKS
0301: AVQDLAAKTL VCHVESPSQD GRSINNRFSD PGTSPDSEVI NLIPDTPIDV PEEFHDLTLS KPCAVPVDAS ILRMHEKSCK KGRKKERLPK IPNSGVKDLP
0401: TPESMSNTEV FGDLMHGEKQ RNGLFCSDTS VLTTAGNGTG NMFSTVIFSG ELLRCSGVSS LGMSCASSNP ESDPEGNHCA SVGTESPESG LSEKLVSSHD
0501: EQNVSKEGRP KESGKCRPEV PNLSKGRGSK KKGNKEKEDI MHDMKHKSDP VKCLGEGIQH SVTENGIASE LGQVVSEKRS LDGGISNMDI LQSEIGERLL
0601: PPRNAWVQCD DCLKWRRIPS LLADQIEETN CRWICKDNLD RAFADCSFPQ EKSNSEINAE LEISDVSGEE DVSRAHLSLN GSGQKNLLGA HQSSWNRIKS
0701: NLFLHRHRKN QPIDEIMVCL CKPPADGRMG CGDGCLNRIL NIECAKGTCP CGEFCSNQQF QKRNYAKLKC FKYGKKGYGL QLLENVSEGQ FLIEYVGEVL
0801: DMHVYEARQK EYALKCHKHF YFMTLNGSEV IDACAKGNLG RFINHSCDPN CRTEKWIVNG EVCIGLFAIR DIKKGEEVTF DYNFVRIFGA AVKKCVCGSP
0901: NCRGYIGGDP LDAEVIVQED SDDEYPEPVL LPKYAKMDQK EDNITCATSS IKCAKIKIQR KRPNKKNTLD GLIAENQETS CQTDINSFVG QEKVNLGNSV
1001: AVVSLNVREE SENFPGVSPA SALKAETCAT FKASECLSHS STEPVETSLS LKDTCETVSG VRKGFTVAGD VAKYSISSAQ ALDITSPDAV VSKSLKKSKS
1101: SNGKETPESC LFVKTSRESS LVKKGKQRNY AVNSRSSPDV DSKLQVPQPK LKKPPDGSLH GHFEAVEEKL NELLDHDGGI SKRKDASRCY LKLLLLTAAS
1201: GDGCNGEAIQ SNRDLSMILD AILKTKSRTV LMDIINKNGL QMLHNIMKRY RREFNKIPIL RKLLKVLEHL AVRDILSPEH INGGTSRAGV QSLRSSILGL
1301: TEHEDKQVHQ IARNFRDRIL RPLRKRICID KDDCRINTHS GSQYNRCLAS QNQWCDLGCK TSEGADYTCH STVASVQADG GVLDGSSASC SDIGEACMAK
1401: KRKRKSRWDQ EAEAKSDPRN ESDVAEDQKQ VLDDDVPPGY EFPPGFSVPI KACKVLSDDS STAIYSTEEG NWGEHPQPVV MGHLQQRFVS RLPVSYGIPF
1501: SEVQQFGSHQ KGRFDAWTVS PGIPFHPFPP LPPYPCDRRG FVPTASELPQ NAGEDWGACS PSHLAQNPPS VSGADQPQDG NGNQLGCERA SESHNLGRKN
1601: FRKQKFNNSK LVPPWLRIRS GWEYTGNSMC IPGASRENEF RSTHNNHLGM QNLGHALRPN TFHRY
0101: CIAPRRRSGR NSKLSQSLAT VPARKGRRIA IKKTSIDFSS LQITRKRRSY FSKQARSSAW GLLENTVQYL EHNVRLEIAL GKQKNLRIAK KGGSRNEKHG
0201: KKQIDRKPRK SKGKSSIPRG PISLKVKFGS HCLMDGIPVI DNDTNKNSNA REELKEMTKV ASEVDNRIGE EVLSVQFHGC NGNLDNDHVS LSEGCQPGKS
0301: AVQDLAAKTL VCHVESPSQD GRSINNRFSD PGTSPDSEVI NLIPDTPIDV PEEFHDLTLS KPCAVPVDAS ILRMHEKSCK KGRKKERLPK IPNSGVKDLP
0401: TPESMSNTEV FGDLMHGEKQ RNGLFCSDTS VLTTAGNGTG NMFSTVIFSG ELLRCSGVSS LGMSCASSNP ESDPEGNHCA SVGTESPESG LSEKLVSSHD
0501: EQNVSKEGRP KESGKCRPEV PNLSKGRGSK KKGNKEKEDI MHDMKHKSDP VKCLGEGIQH SVTENGIASE LGQVVSEKRS LDGGISNMDI LQSEIGERLL
0601: PPRNAWVQCD DCLKWRRIPS LLADQIEETN CRWICKDNLD RAFADCSFPQ EKSNSEINAE LEISDVSGEE DVSRAHLSLN GSGQKNLLGA HQSSWNRIKS
0701: NLFLHRHRKN QPIDEIMVCL CKPPADGRMG CGDGCLNRIL NIECAKGTCP CGEFCSNQQF QKRNYAKLKC FKYGKKGYGL QLLENVSEGQ FLIEYVGEVL
0801: DMHVYEARQK EYALKCHKHF YFMTLNGSEV IDACAKGNLG RFINHSCDPN CRTEKWIVNG EVCIGLFAIR DIKKGEEVTF DYNFVRIFGA AVKKCVCGSP
0901: NCRGYIGGDP LDAEVIVQED SDDEYPEPVL LPKYAKMDQK EDNITCATSS IKCAKIKIQR KRPNKKNTLD GLIAENQETS CQTDINSFVG QEKVNLGNSV
1001: AVVSLNVREE SENFPGVSPA SALKAETCAT FKASECLSHS STEPVETSLS LKDTCETVSG VRKGFTVAGD VAKYSISSAQ ALDITSPDAV VSKSLKKSKS
1101: SNGKETPESC LFVKTSRESS LVKKGKQRNY AVNSRSSPDV DSKLQVPQPK LKKPPDGSLH GHFEAVEEKL NELLDHDGGI SKRKDASRCY LKLLLLTAAS
1201: GDGCNGEAIQ SNRDLSMILD AILKTKSRTV LMDIINKNGL QMLHNIMKRY RREFNKIPIL RKLLKVLEHL AVRDILSPEH INGGTSRAGV QSLRSSILGL
1301: TEHEDKQVHQ IARNFRDRIL RPLRKRICID KDDCRINTHS GSQYNRCLAS QNQWCDLGCK TSEGADYTCH STVASVQADG GVLDGSSASC SDIGEACMAK
1401: KRKRKSRWDQ EAEAKSDPRN ESDVAEDQKQ VLDDDVPPGY EFPPGFSVPI KACKVLSDDS STAIYSTEEG NWGEHPQPVV MGHLQQRFVS RLPVSYGIPF
1501: SEVQQFGSHQ KGRFDAWTVS PGIPFHPFPP LPPYPCDRRG FVPTASELPQ NAGEDWGACS PSHLAQNPPS VSGADQPQDG NGNQLGCERA SESHNLGRKN
1601: FRKQKFNNSK LVPPWLRIRS GWEYTGNSMC IPGASRENEF RSTHNNHLGM QNLGHALRPN TFHRY
0001: MDCKENGVGD ASGCNIDANS LASNLAMNTN EDFYEKLSSR GQNLDSVSSL EIPQTASSVN HTIEGQRKCF TEIEQMGYGN SNSQEDAGNT DDDLYVCYNA
0101: DDTQEQGVVS GELEQSQELI CDTDLLVNCN KLDDGKESQD TNVSLVSIFS GSMQEKEAPQ AKEDEGYGGT TLPIGGSGID TESTFVNDAP EQFESLETTK
0201: HIKPDEVESD GISYRFDDGG KEGRNGPSSD LDTGSSDDIS LSQSFSFPDS LLDSSVFGCS ATESYLEDAI DIEGNGTIVV SPSLAITEML NNDDGGLCSH
0301: DLNKITVTET INPDLKLVRE DRLDTDLSVM NEKMLKNHVG DSSSESAVAA LSMNNGMAAD LRAENFSQSS PIDEKTLDME ANSPITDSSL IWNFPLNFGS
0401: GGIEVCNPEN AVEPLRIVDD NGRIGGEVAS ASGSDFCEAG MSSSRRKARD GKQCKVVQTK TSARHLRKSS RKKQSERDIE SIFKCSKQKR SSLLKTSRSS
0501: EWGLPSKTTE IFLQSNNIPY DGPPHHEPQR SQGNLNNGEH NRSSHNGNVE GSNRNIQASS GSCLRLKVKF GKSGGQNPLN ITVSKVSGNS LPGNGIVKAG
0601: TCLELPGSAH FGEDKMQTVE TKEDLVEKSN PVEKVSYLQS SDSMRDKKYN QDAGGLCRKV GGDVLDDDPH LSSIRMVEEC ERATGTQSLD AETSPDSEVI
0701: NSVPDSIVNI EHKEGLHHGF FSTPEDVVKK NRVLEKEDEL RASKSPSENG SHLIPNAKKA KHPKSKSNGT KKGKSKFSES AKDGRKNESH EGVEQRKSLN
0801: TSMGRDDSDY PEVGRIESHK TTGALLDADI GKTSATYGTI SSDVTHGEMV VDVTIEDSYS TESAWVRCDD CFKWRRIPAS VVGSIDESSR WICMNNSDKR
0901: FADCSKSQEM SNEEINEELG IGQDEADAYD CDAAKRGKEK EQKSKRLTGK QKACFKAIKT NQFLHRNRKS QTIDEIMVCH CKPSPDGRLG CGEECLNRML
1001: NIECLQGTCP AGDLCSNQQF QKRKYVKFER FQSGKKGYGL RLLEDVREGQ FLIEYVGEVL DMQSYETRQK EYAFKGQKHF YFMTLNGNEV IDAGAKGNLG
1101: RFINHSCEPN CRTEKWMVNG EICVGIFSMQ DLKKGQELTF DYNYVRVFGA AAKKCYCGSS HCRGYIGGDP LNGDVIIQSD SDEEYPELVI LDDDESGEGI
1201: LGATSRTFTD DADEQMPQSF EKVNGYKDLA PDNTQTQSSV SVKLPEREIP PPLLQPTEVL KELSSGISIT AVQQEVPAEK KTKSTSPTSS SLSRMSPGGT
1301: NSDKTTKHGS GEDKKILPRP RPRMKTSRSS ESSKRDKGGI YPGVNKAQVI PVNKLQQQPI KSKGSEKVSP SIETFEGKLN ELLDAVGGIS KRRDSAKGYL
1401: KLLLLTAASR GTDEEGIYSN RDLSMILDAL LKTKSKSVLV DIINKNGLLL QGWKALRTLF YHSPSMTTIR FIILRGASET DGYLSILENL GASTGRRDRS
1501: L
0101: DDTQEQGVVS GELEQSQELI CDTDLLVNCN KLDDGKESQD TNVSLVSIFS GSMQEKEAPQ AKEDEGYGGT TLPIGGSGID TESTFVNDAP EQFESLETTK
0201: HIKPDEVESD GISYRFDDGG KEGRNGPSSD LDTGSSDDIS LSQSFSFPDS LLDSSVFGCS ATESYLEDAI DIEGNGTIVV SPSLAITEML NNDDGGLCSH
0301: DLNKITVTET INPDLKLVRE DRLDTDLSVM NEKMLKNHVG DSSSESAVAA LSMNNGMAAD LRAENFSQSS PIDEKTLDME ANSPITDSSL IWNFPLNFGS
0401: GGIEVCNPEN AVEPLRIVDD NGRIGGEVAS ASGSDFCEAG MSSSRRKARD GKQCKVVQTK TSARHLRKSS RKKQSERDIE SIFKCSKQKR SSLLKTSRSS
0501: EWGLPSKTTE IFLQSNNIPY DGPPHHEPQR SQGNLNNGEH NRSSHNGNVE GSNRNIQASS GSCLRLKVKF GKSGGQNPLN ITVSKVSGNS LPGNGIVKAG
0601: TCLELPGSAH FGEDKMQTVE TKEDLVEKSN PVEKVSYLQS SDSMRDKKYN QDAGGLCRKV GGDVLDDDPH LSSIRMVEEC ERATGTQSLD AETSPDSEVI
0701: NSVPDSIVNI EHKEGLHHGF FSTPEDVVKK NRVLEKEDEL RASKSPSENG SHLIPNAKKA KHPKSKSNGT KKGKSKFSES AKDGRKNESH EGVEQRKSLN
0801: TSMGRDDSDY PEVGRIESHK TTGALLDADI GKTSATYGTI SSDVTHGEMV VDVTIEDSYS TESAWVRCDD CFKWRRIPAS VVGSIDESSR WICMNNSDKR
0901: FADCSKSQEM SNEEINEELG IGQDEADAYD CDAAKRGKEK EQKSKRLTGK QKACFKAIKT NQFLHRNRKS QTIDEIMVCH CKPSPDGRLG CGEECLNRML
1001: NIECLQGTCP AGDLCSNQQF QKRKYVKFER FQSGKKGYGL RLLEDVREGQ FLIEYVGEVL DMQSYETRQK EYAFKGQKHF YFMTLNGNEV IDAGAKGNLG
1101: RFINHSCEPN CRTEKWMVNG EICVGIFSMQ DLKKGQELTF DYNYVRVFGA AAKKCYCGSS HCRGYIGGDP LNGDVIIQSD SDEEYPELVI LDDDESGEGI
1201: LGATSRTFTD DADEQMPQSF EKVNGYKDLA PDNTQTQSSV SVKLPEREIP PPLLQPTEVL KELSSGISIT AVQQEVPAEK KTKSTSPTSS SLSRMSPGGT
1301: NSDKTTKHGS GEDKKILPRP RPRMKTSRSS ESSKRDKGGI YPGVNKAQVI PVNKLQQQPI KSKGSEKVSP SIETFEGKLN ELLDAVGGIS KRRDSAKGYL
1401: KLLLLTAASR GTDEEGIYSN RDLSMILDAL LKTKSKSVLV DIINKNGLLL QGWKALRTLF YHSPSMTTIR FIILRGASET DGYLSILENL GASTGRRDRS
1501: L
Arabidopsis Description
EFShistone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) [Source:TAIR;Acc:AT1G77300]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.