Factsheet for Solyc03g117930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc08g007170.1.1
Solyc12g009100.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Solyc12g009100.1.1	AT2G06005.1	19429606
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc08g007170.1.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117910.2.1	Tomato	plastid	28.06	47.83
Solyc03g117920.1.1	Tomato	nucleus	23.98	39.5
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	18.37	37.11
Solyc04g072200.1.1	Tomato	cytosol	44.22	36.16
Solyc12g042440.1.1	Tomato	nucleus, plastid	32.99	35.47
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	34.35	35.31
AT4G00650.1	Thale cress	plastid	18.2	34.08
CDY05835	Canola	cytosol, nucleus, plastid	20.58	33.7
Bra035723.1-P	Field mustard	plastid	20.75	33.33
KRH54046	Soybean	nucleus	28.91	28.72
KRH63904	Soybean	nucleus	29.08	28.45
CDX71688	Canola	nucleus	27.55	27.69
CDY32645	Canola	nucleus	27.21	27.44
Bra029192.1-P	Field mustard	nucleus, plastid	27.21	27.26
CDY38847	Canola	nucleus, plastid	26.87	26.51
VIT_19s0014g00060.t01	Wine grape	nucleus	12.76	23.66
Os03t0851400-01	Rice	extracellular	15.14	20.32
Solyc09g076050.2.1	Tomato	nucleus	16.67	19.07
EER93089	Sorghum	plastid	14.97	19.05
Solyc06g007640.2.1	Tomato	nucleus	16.16	17.72
Solyc06g082930.2.1	Tomato	nucleus	15.99	17.57
Solyc11g071340.1.1	Tomato	nucleus	13.44	16.49
TraesCS4A01G329000.1	Wheat	plastid	13.78	16.36
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.63	16.17
TraesCS5B01G543400.1	Wheat	plastid	14.12	15.93
TraesCS5D01G544800.1	Wheat	mitochondrion	13.78	14.44
Solyc04g008840.2.1	Tomato	nucleus	13.27	12.96

Protein Annotations

EnsemblPlants:Solyc03g117930.2.1	EnsemblPlantsGene:Solyc03g117930.2	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	SEG:seg	UniParc:UPI0002767890	UniProt:K4BLU4	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4BLU4]

Coordinates

chr3:+:66911148..66918680

Molecular Weight (calculated)

64551.6 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.312

Length

588 amino acids

Sequence
(BLAST)

001: MVEPADAATA APSPSRPLPA VEAQSQLIET VNALQNITKQ SEFLQPPIND DSIAKFSKLS DAFSAFQVCF AELHRHVVSI GTLIDSMRPL DTTSTTPLSV
101: SSLPAAAAPG PEPAMEFGPS EEEKVEVKSP CLELKSTRSE LESICKRVDG RGLRKYMITH ISDINVLLEE VPKALKLSRN PARLVLDCVG KFYLQGSRAY
201: VKGSPVVNGR KASILVLDCF LLMGIDEGVE IEKEVKEEAE KAALAWRKRL IAEGGLRKVY DMDARGLLLL IGCFGIPGAF SNEDIRDLFL ASPFKKNISC
301: SLTRSNVFMA KITEIIEGMV NQKMEMEAVD LAYTFGMEDR FNSQKLVTTY LRESKEPLKK MKGKPQGSLA AVHEAKKKHL AALRSVIKCS RRHNIDLSKL
401: LPGWKINEQI MCLEKEIEVG EKKMAQKRKN DETESSGMIS NKEAKQSHFP NPRLQQERVV NHIDSNTTLL ESGTAGMPNT KLGDAYRPSP YLAGSTGLPN
501: TKPADAYRPS PYLEGSRGLP NAIPTDVAGR SSASNPYQFG DTVLTSELYR SSGWRVVDVV PSAASAHQSS FLFTGPDSFA LGRDYLQP

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.