Factsheet for Solyc12g009100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT2G06005.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT2G06005.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT2G06005.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT2G06005.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT2G06005.1	Solyc12g042440.1.1	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048982	Potato	cytosol	14.08	83.05
VIT_11s0016g01110.t01	Wine grape	plasma membrane	77.3	76.2
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	70.11	68.54
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	69.54	67.98
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	68.39	67.04
Bra015180.1-P	Field mustard	plasma membrane	67.53	63.86
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	63.51	63.51
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	63.22	63.04
CDY51843	Canola	cytosol, peroxisome, plasma membrane	63.22	63.04
CDX70932	Canola	cytosol, mitochondrion, peroxisome	63.22	63.04
EES05887	Sorghum	peroxisome	62.64	61.58
TraesCS6B01G367400.1	Wheat	plasma membrane	61.49	60.62
TraesCS6A01G336900.1	Wheat	plasma membrane	60.92	60.23
GSMUA_Achr8P22670_001	Banana	plasma membrane	29.31	60.0
Os02t0778300-01	Rice	plasma membrane	60.92	59.55
TraesCS6D01G317300.1	Wheat	plasma membrane	60.63	59.44
TraesCS7B01G069200.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	62.36	58.97
TraesCS7A01G163400.1	Wheat	plasma membrane	62.07	58.7
TraesCS7D01G165500.3	Wheat	plasma membrane	61.78	58.42
Zm00001d018275_P001	Maize	peroxisome	61.78	56.73
HORVU6Hr1G081380.8	Barley	plasma membrane	58.33	52.05
CDY33404	Canola	plasma membrane	67.53	43.44
CDY64735	Canola	cytosol, nucleus, plasma membrane	67.24	43.25
Solyc07g041890.1.1	Tomato	nucleus	27.87	38.49

Protein Annotations

EnsemblPlants:Solyc12g009100.1.1	EnsemblPlantsGene:Solyc12g009100.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM192
ncoils:Coil	PANTHER:PTHR31592	PFAM:PF14802	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276982B
UniProt:K4DBZ8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr12:-:2419442..2430753

Molecular Weight (calculated)

39578.2 Da

IEP (calculated)

6.421

GRAVY (calculated)

0.024

Length

348 amino acids

Sequence
(BLAST)

001: MSTEIHSSSI SESPDGNSLF VDVLHEAPLS GHRKPTSLIG SIFYCFLLAG FAVLAVGATW IFHPIERLVF PLLCSCNAAL LLVTGIFQQY LVYQVKKIRL
101: QGYYIFSQKL KHVIRLPFAT IAYGTAAMLL VMVWDPHIGI LSMLTLFRIV MLMEVVCVSS FMTVYIGCVH QYNSLDSQPD VLKSLYSPLQ PSSSLEGLRY
201: QDGGRLSDQQ MALLQYQQEN IHFLGEEILR LQETLSKYER CNDGSAPQVD LAHLLATRDQ ELRTLKAEMN QLQSELRLAR SIVEEKDAEI QRIRNANNQY
301: VEENERLRAI LGEWSSRAAK LERALELERM SNLELQKNIT TLKIQMCE

Best Arabidopsis Sequence Match ( AT2G06005.1 )
(BLAST)

001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP

Arabidopsis Description

FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.