Factsheet for Solyc06g074450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc08g007170.1.1
Solyc12g009100.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Solyc12g009100.1.1	AT2G06005.1	19429606
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc08g007170.1.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094724	Potato	nucleus	91.43	67.05
Solyc03g117920.1.1	Tomato	nucleus	27.1	43.42
Solyc03g117930.2.1	Tomato	nucleus	35.31	34.35
Solyc04g072200.1.1	Tomato	cytosol	41.43	32.96
Solyc12g042440.1.1	Tomato	nucleus, plastid	29.02	30.35
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	13.29	26.12
Solyc03g117910.2.1	Tomato	plastid	15.73	26.09
VIT_19s0014g00060.t01	Wine grape	nucleus	14.16	25.55
KRH54046	Soybean	nucleus	24.48	23.65
KRH63904	Soybean	nucleus	24.3	23.13
CDY32645	Canola	nucleus	23.25	22.81
Bra029192.1-P	Field mustard	nucleus, plastid	23.08	22.49
CDY38847	Canola	nucleus, plastid	23.43	22.48
CDY05835	Canola	cytosol, nucleus, plastid	13.81	22.01
CDX71688	Canola	nucleus	22.38	21.88
Bra035723.1-P	Field mustard	plastid	13.81	21.58
AT4G00650.1	Thale cress	plastid	11.36	20.7
Solyc06g082930.2.1	Tomato	nucleus	14.69	15.7
EER93089	Sorghum	plastid	12.59	15.58
Solyc09g076050.2.1	Tomato	nucleus	13.99	15.56
Os03t0851400-01	Rice	extracellular	11.54	15.07
Solyc06g007640.2.1	Tomato	nucleus	13.99	14.93
TraesCS4A01G329000.1	Wheat	plastid	11.01	12.73
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	11.19	12.03
Solyc11g071340.1.1	Tomato	nucleus	9.79	11.69
TraesCS5B01G543400.1	Wheat	plastid	10.49	11.52
TraesCS5D01G544800.1	Wheat	mitochondrion	11.19	11.41
Solyc04g008840.2.1	Tomato	nucleus	11.36	10.8

Protein Annotations

EnsemblPlants:Solyc06g074450.1.1	EnsemblPlantsGene:Solyc06g074450.1	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF3
PFAM:PF07899	SEG:seg	UniParc:UPI00027665A7	UniProt:K4C9G3	MapMan:35.1	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4C9G3]

Coordinates

chr6:+:46073712..46075430

Molecular Weight (calculated)

62786.3 Da

IEP (calculated)

9.863

GRAVY (calculated)

-0.436

Length

572 amino acids

Sequence
(BLAST)

001: MDHCGLRKYM TTHISNFRRL REEVHKALRL SPNPATLVFN CIGKFYITAG KKFANESPLG RGRKAKVLIL ECLLLMIGIY DKEIELENWV KEEAEHTALA
101: WLERMNSEGG KPQEIDARGL LFFIGGFGIP DQFTNANIRN LFQVSNLKWS CDALKRSNAL LAKLPEIIEE MVANKAVVKA VHIVYSVGMQ EIFNPRTLLT
201: TFIRECKKSF DNMNGSQSAH QGNIVAKGKY LGDLRSIIKC LRIHEVDPSK VLPGWEISKR IASLEKEISE FNKQILPDKK IAHGSHKRKK DGNVWLRNKE
301: VKHSHPSNPW PPQHHRVASN VINNNTLFEG GVTAGLNYDY FMPPLVLHGP VEGSIHENVG YSLAGPVRGV AIGGPGAGMS ANSIHAGMDV VPQGVPYAGH
401: GGSRVDSIPG LIGSHAGQFY GSAYRPSTPN TKTGDTYRPA PFMESSKGLP NTIPGDSSRT PPYLKVSPGL PNTISSNACR PSPYTESSKG LRKTISGDAN
501: RPSPKLEGSM ELPNTINGDA YRPPPYLEGS MGLPNTPPPH QFVNTVPATE LNQSRGSKAV DVHPSSSLYK QR

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.