Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- mitochondrion 2
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00650.1 | EES05887 | AT2G06005.1 | 19429606 |
| AT4G00650.1 | EER93089 | AT4G00650.1 | 17138694 |
| AT4G00650.1 | EER93089 | AT4G00650.1 | 19429606 |
| AT4G00650.1 | EER94471 | AT4G17060.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0851400-01 | Rice | extracellular | 40.69 | 42.92 |
| TraesCS4A01G329000.1 | Wheat | plastid | 45.02 | 42.02 |
| TraesCS5B01G543400.1 | Wheat | plastid | 45.67 | 40.5 |
| HORVU5Hr1G122680.1 | Barley | mitochondrion, peroxisome, plastid | 46.32 | 40.23 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 45.02 | 37.08 |
| VIT_19s0014g00030.t01 | Wine grape | cytosol, golgi, nucleus | 15.8 | 25.09 |
| AT4G00650.1 | Thale cress | plastid | 15.8 | 23.25 |
| CDY05835 | Canola | cytosol, nucleus, plastid | 16.02 | 20.61 |
| Bra035723.1-P | Field mustard | plastid | 16.02 | 20.22 |
| Solyc03g117910.2.1 | Tomato | plastid | 14.5 | 19.42 |
| PGSC0003DMT400084922 | Potato | cytosol | 14.72 | 17.17 |
| KRH63904 | Soybean | nucleus | 21.43 | 16.47 |
| KRH54046 | Soybean | nucleus | 20.56 | 16.05 |
| EES02294 | Sorghum | nucleus | 17.75 | 15.3 |
| CDY32645 | Canola | nucleus | 19.26 | 15.27 |
| CDX71688 | Canola | nucleus | 19.05 | 15.04 |
| Bra029192.1-P | Field mustard | nucleus, plastid | 19.05 | 14.99 |
| Solyc03g117930.2.1 | Tomato | nucleus | 19.05 | 14.97 |
| CDY38847 | Canola | nucleus, plastid | 19.26 | 14.93 |
| EER92706 | Sorghum | plastid | 15.58 | 14.04 |
| Solyc12g042440.1.1 | Tomato | nucleus, plastid | 16.23 | 13.71 |
| PGSC0003DMT400037427 | Potato | nucleus, plastid | 15.37 | 12.84 |
| Solyc06g074450.1.1 | Tomato | cytosol, mitochondrion, nucleus, peroxisome | 15.58 | 12.59 |
| Solyc04g072200.1.1 | Tomato | cytosol | 19.26 | 12.38 |
| EER99638 | Sorghum | cytosol | 16.45 | 12.32 |
| PGSC0003DMT400080001 | Potato | nucleus | 19.05 | 12.29 |
| PGSC0003DMT400094724 | Potato | nucleus | 20.56 | 12.18 |
| KXG34492 | Sorghum | nucleus | 16.23 | 12.14 |
| PGSC0003DMT400080000 | Potato | nucleus | 19.48 | 11.95 |
| KXG31679 | Sorghum | nucleus | 16.23 | 11.85 |
| VIT_19s0014g00060.t01 | Wine grape | nucleus | 5.84 | 8.52 |
| Solyc03g117920.1.1 | Tomato | nucleus | 5.63 | 7.28 |
Protein Annotations
| EnsemblPlants:EER93089 | EnsemblPlantsGene:SORBI_3001G010500 | EntrezGene:8061405 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF28 | PFAM:PF07899 | ProteinID:EER93089 | ProteinID:EER93089.1 | RefSeq:XP_002466091.1 | SEG:seg |
| UniParc:UPI0001A8281D | UniProt:C5WS28 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:930875..933769
Molecular Weight (calculated)
49910.4 Da
IEP (calculated)
4.647
GRAVY (calculated)
-0.336
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPPPPAST AASRAAMLHS VNTLASFSDT LADFLDQWDS VVLDVASIAA TFAVLFPGPG SNPKPYLPAP APEPVREREP TPAPQPEREP EPTLAPQPEP
101: GPNAAPAPEP EPEPQWEREP SPLPEPQSSP LPEPAPALQP RPAPESAPAP QPEPAPNPDS ERQDGAGDAY AAELEHRCQQ MNCRGVRRFV TAQVRDGGVE
201: WLRQVGPGAL RRAPDPAALV LRAIGRYYIR AESPDVEAAC TLLLELYVRA GCPRLPWGQG RDAELLLRQE AREVALTWRS RLLRGSGGGV GNAPGAAGAR
301: GLAFFMAAFG VPVEFPAQEL CDLVNAADVA ACVEVLKASK LFVRKMRDVV IEMINKAMYL QAMRIILAFE FQEAFPLAPT LALIIEKLEH DTKDENEGQA
401: SERDEEDLAL LSSISKCMED HKLSPSEFTS FAAKIALLEE RVGKPKQACT GVKRKRAEEC VG
101: GPNAAPAPEP EPEPQWEREP SPLPEPQSSP LPEPAPALQP RPAPESAPAP QPEPAPNPDS ERQDGAGDAY AAELEHRCQQ MNCRGVRRFV TAQVRDGGVE
201: WLRQVGPGAL RRAPDPAALV LRAIGRYYIR AESPDVEAAC TLLLELYVRA GCPRLPWGQG RDAELLLRQE AREVALTWRS RLLRGSGGGV GNAPGAAGAR
301: GLAFFMAAFG VPVEFPAQEL CDLVNAADVA ACVEVLKASK LFVRKMRDVV IEMINKAMYL QAMRIILAFE FQEAFPLAPT LALIIEKLEH DTKDENEGQA
401: SERDEEDLAL LSSISKCMED HKLSPSEFTS FAAKIALLEE RVGKPKQACT GVKRKRAEEC VG
001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
Arabidopsis Description
FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.