CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93089

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17060.1	EER93089	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029974_P001	Maize	nucleus	90.06	90.34
Zm00001d000045_P001	Maize	nucleus	86.02	87.11
TraesCS1B01G229500.1	Wheat	nucleus	71.12	72.24
HORVU1Hr1G055420.1	Barley	cytosol	68.94	70.7
TraesCS1D01G218500.1	Wheat	nucleus	68.01	68.65
TraesCS1A01G216300.1	Wheat	nucleus	67.39	68.03
Os10t0564200-01	Rice	nucleus	69.57	66.67
CDY42958	Canola	nucleus	30.12	31.29
EES15479	Sorghum	nucleus	25.47	25.95
Solyc08g007170.1.1	Tomato	nucleus	29.5	23.28
PGSC0003DMT400052836	Potato	nucleus	28.88	22.46
Bra040110.1-P	Field mustard	cytosol	28.57	22.28
VIT_00s0204g00020.t01	Wine grape	nucleus	26.4	21.63
CDY35602	Canola	cytosol	27.64	21.5
KXG36174	Sorghum	cytosol	18.94	18.1
AT4G17060.1	Thale cress	nucleus	14.6	15.16

Protein Annotations

EnsemblPlants:EER94471	EnsemblPlantsGene:SORBI_3001G294700	EntrezGene:8058064	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom
InterPro:Myb-like_dom	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837	PFscan:PS50090	ProteinID:EER94471
ProteinID:EER94471.1	RefSeq:XP_002467473.1	SEG:seg	SMART:SM00595	UniParc:UPI0001A82EC4	UniProt:C5WRH0
MapMan:15.5.20	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:57346419..57347960

Molecular Weight (calculated)

34274.5 Da

IEP (calculated)

10.100

GRAVY (calculated)

-0.597

Length

322 amino acids

Sequence
(BLAST)

001: MSSSSSDAAR DDVVSSPDLP PLAAPVAAAA AAAAAAASSG GGLGLGGGGS GRRLPPPCWT HEETLALIEA YRDRWERLRK GNLRAADWDD VANTVTARCG
101: RFPTATHKSG VQCRHKIEKL RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPGSPPSPV SSPSSSEEGV RSRSLHGLIS
201: NGGAGSGLRF TIPKASRTKP AAVAAVKPER SGGVEDDAES EAMAEVAAAL RAVGEGFLRM EERRLELSLQ MEKERMESEM KRTQTMLDAQ QLFLEAFLGK
301: QQQQQQHKKA RVSPPSDAME ED

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.