Factsheet for Zm00001d029974_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000045_P001	Maize	nucleus	89.72	90.57
EER94471	Sorghum	nucleus	90.34	90.06
HORVU1Hr1G055420.1	Barley	cytosol	71.65	73.25
TraesCS1B01G229500.1	Wheat	nucleus	70.72	71.61
TraesCS1D01G218500.1	Wheat	nucleus	67.91	68.34
TraesCS1A01G216300.1	Wheat	nucleus	67.29	67.71
Os10t0564200-01	Rice	nucleus	67.91	64.88
CDY42958	Canola	nucleus	30.53	31.61
Zm00001d052798_P001	Maize	nucleus	25.55	28.08
Zm00001d031266_P001	Maize	nucleus	26.17	26.33
Solyc08g007170.1.1	Tomato	nucleus	28.97	22.79
VIT_00s0204g00020.t01	Wine grape	nucleus	27.73	22.65
Bra040110.1-P	Field mustard	cytosol	28.97	22.52
PGSC0003DMT400052836	Potato	nucleus	28.66	22.22
CDY35602	Canola	cytosol	28.66	22.22
Zm00001d021389_P001	Maize	cytosol	20.25	19.4
Zm00001d006331_P001	Maize	cytosol	18.69	17.96
AT4G17060.1	Thale cress	nucleus	15.26	15.81

Protein Annotations

EMBL:BT040727	EnsemblPlants:Zm00001d029974_P001	EnsemblPlants:Zm00001d029974_T001	EnsemblPlantsGene:Zm00001d029974	EntrezGene:100273299	InterPro:IPR006578
InterPro:IPR017877	InterPro:MADF-dom	InterPro:Myb-like_dom	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837
PFscan:PS50090	ProteinID:AIB05343.1	ProteinID:ONL99901.1	SEG:seg	SMART:SM00595	UniParc:UPI00017B76E8
UniProt:B4FUD9	MapMan:15.5.20	:	:	:	:

Description

Trihelix-transcription factor 4FRIGIDA interacting protein 2

Coordinates

chr1:+:97104476..97105441

Molecular Weight (calculated)

34108.3 Da

IEP (calculated)

9.958

GRAVY (calculated)

-0.567

Length

321 amino acids

Sequence
(BLAST)

001: MSSSTSDAAR DDVVSSPDLP PLSAHVAAAA AAAAAAASSG GGIGLGGGGS GRRLPPPCWT HEETLALIEA YRDRWEALRK GNLRAADWDD VANAVTARCG
101: RFPTATHKSG VQCRHKIEKL RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPASPPSPV SSPSSSEEAV RSRSLHGLIS
201: NGGAGSGLRF TIPKACRTKP AAAAAVKPER SGGEDDAESE AMAEVAAALR SVGEGFLRME ERRLELSLQM EKERMESEMK RTQTMLDAQQ LFLEAFLGKQ
301: QQQQQHKKAR VSPSSAAMEE D

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.