Factsheet for Bra040110.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029192.1-P
Bra035723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17060.1	Bra029192.1-P	AT4G00650.1	19429606
AT4G17060.1	Bra035723.1-P	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35602	Canola	cytosol	80.15	79.95
Bra004859.1-P	Field mustard	nucleus	23.97	32.78
AT4G17060.1	Thale cress	nucleus	24.46	32.58
VIT_00s0204g00020.t01	Wine grape	nucleus	30.27	31.81
Bra000360.1-P	Field mustard	nucleus	26.88	31.18
TraesCS1A01G216300.1	Wheat	nucleus	22.76	29.47
TraesCS1D01G218500.1	Wheat	nucleus	22.52	29.15
TraesCS1B01G229500.1	Wheat	nucleus	22.28	29.02
Zm00001d029974_P001	Maize	nucleus	22.52	28.97
HORVU1Hr1G055420.1	Barley	cytosol	21.79	28.66
EER94471	Sorghum	nucleus	22.28	28.57
Zm00001d000045_P001	Maize	nucleus	21.79	28.3
Solyc08g007170.1.1	Tomato	nucleus	26.88	27.21
PGSC0003DMT400052836	Potato	nucleus	27.12	27.05
Os10t0564200-01	Rice	nucleus	20.58	25.3
Bra015090.1-P	Field mustard	nucleus	16.46	22.9
Bra007069.1-P	Field mustard	nucleus	15.5	20.58

Protein Annotations

EnsemblPlants:Bra040110.1	EnsemblPlants:Bra040110.1-P	EnsemblPlantsGene:Bra040110	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	InterPro:IPR006578	InterPro:MADF-dom	PANTHER:PTHR31307
PANTHER:PTHR31307:SF18	PFAM:PF13837	SEG:seg	SMART:SM00595	UniParc:UPI0002544318	UniProt:M4FG83
MapMan:15.5.20	:	:	:	:	:

Description

AT4G17060 (E=7e-118) FIP2 | unknown protein

Coordinates

chrA01:+:10582246..10583487

Molecular Weight (calculated)

45764.3 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.843

Length

413 amino acids

Sequence
(BLAST)

001: MSTPDGSPVA MAVDPSTAVT VASTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE
101: KQRSLNRPGK FSSSWDLFPI LDAMEFAPVT PTAVEPYDPD LDNDDESNGL DGFRVRSKRS GKFDSPRDGF GVRSRSKSQM KMYGGFDSDH DSGGGFGLKR
201: RYNGNPKVSG DFDADSDEEI VLVPKATRLK GSHGKPSSGE FGGGFPLKSF GDRSFASHGF KAKNFSKPEA NFSPEMDYDD EFDEGFNPRI QHSRSSSRAN
301: GYGRKDGSYP RSNNTGVSNG YGSSSRFKHE QMNAADVESD PIDEVVSSVK MLTEMFVRVE NSKMEMMREM EKTRMEMELK HCQMMLESQQ QIIGAFAEAL
401: SEKKSTNARR PGS

Best Arabidopsis Sequence Match ( AT4G17060.1 )
(BLAST)

001: MGFAPVTPAA VETYDPDVDH DDESNGLDGF RVRSKRSGKF SGGYSDSPRE VGDGYGVRSR ARSNMKMYGG FKSEFDSDHD SGSGFGLKRK YNGNPKVSAD
101: FDADSDDEIV LVPKATRLRT HGKPSSGDFS HGSGGGFPLK SFGDRNFASH GFKPKNFSKP EPNFSQDLDY DDEFDDDRAE REGFNPRIQS SRSSSRVNGY
201: SRKDGSYPRN TGASNGYGSS SRFKHEQMNA AAEVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKS RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPVS

Arabidopsis Description

FIP2Protein FIP2 [Source:UniProtKB/Swiss-Prot;Acc:O23550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.