CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71688
CDY05835
CDY32645
CDY38847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17060.1	CDX71688	AT4G00650.1	19429606
AT4G17060.1	CDY05835	AT4G00650.1	19429606
AT4G17060.1	CDY32645	AT4G00650.1	19429606
AT4G17060.1	CDY38847	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040110.1-P	Field mustard	cytosol	79.95	80.15
CDY42958	Canola	nucleus	44.44	59.35
CDY48253	Canola	nucleus	15.7	36.31
CDX74679	Canola	nucleus	24.64	33.77
TraesCS1A01G216300.1	Wheat	nucleus	23.43	30.41
TraesCS1D01G218500.1	Wheat	nucleus	23.19	30.09
VIT_00s0204g00020.t01	Wine grape	nucleus	28.26	29.77
CDX83420	Canola	nucleus	25.12	29.55
TraesCS1B01G229500.1	Wheat	nucleus	22.46	29.34
HORVU1Hr1G055420.1	Barley	cytosol	21.98	28.98
Zm00001d029974_P001	Maize	nucleus	22.22	28.66
Zm00001d000045_P001	Maize	nucleus	21.98	28.62
CDX95611	Canola	nucleus	24.15	28.33
CDX83751	Canola	nucleus	8.94	28.03
AT4G17060.1	Thale cress	nucleus	20.77	27.74
EER94471	Sorghum	nucleus	21.5	27.64
Solyc08g007170.1.1	Tomato	nucleus	26.57	26.96
PGSC0003DMT400052836	Potato	nucleus	26.09	26.09
Os10t0564200-01	Rice	nucleus	21.01	25.89
CDY39785	Canola	nucleus	15.7	23.38
CDX77381	Canola	nucleus	16.43	22.9
CDY52087	Canola	nucleus, plastid	16.18	22.56
CDY71514	Canola	nucleus	15.7	21.59
CDX73485	Canola	nucleus	15.46	20.85

Protein Annotations

EnsemblPlants:CDY35602	EnsemblPlantsGene:GSBRNA2T00058958001	InterPro:IPR006578	InterPro:MADF-dom	PANTHER:PTHR31307	PANTHER:PTHR31307:SF18
PFAM:PF13837	ProteinID:CDY35602	ProteinID:CDY35602.1	SEG:seg	SMART:SM00595	UniParc:UPI0004EB3911
UniProt:A0A078HCS5	MapMan:15.5.20	:	:	:	:

Description

BnaC01g21240DBnaC01g21240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCS5]

Coordinates

chrLK032356:+:122599..123843

Molecular Weight (calculated)

45862.4 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.843

Length

414 amino acids

Sequence
(BLAST)

001: MSTPDGSPVA MAVDPSTAVT VATTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE
101: KQRSLNRPGK FSSSWDLFPI LDAMEFAPVT PTAVEPYDPD LDNDDESNGL DGFRVRSKRS GKFDSPRDGF GVRSRSKSQM KMYGGFDSDH DSGGGFGLKR
201: RYNGNPKVSG DFDADSDDEI VLVPKATRLK GSHGKPSSGE FGGGFPLKSF GDRSFASHGF KAKNFSKPEA NFSPEMDYDD EFDEGFNPRI QHSRSSSRAN
301: GYGRKDGSYP RNNNTGVSNG YGSSSRFKHE QMNAAADVES DPIDEVVSSV KMLTEMFVRV ENSKMEMMRE MEKTRMEMEL KHCQMMLESQ QQIIGAFAEA
401: LSEKKSTNAR RPGS

Best Arabidopsis Sequence Match ( AT4G17060.1 )
(BLAST)

001: MGFAPVTPAA VETYDPDVDH DDESNGLDGF RVRSKRSGKF SGGYSDSPRE VGDGYGVRSR ARSNMKMYGG FKSEFDSDHD SGSGFGLKRK YNGNPKVSAD
101: FDADSDDEIV LVPKATRLRT HGKPSSGDFS HGSGGGFPLK SFGDRNFASH GFKPKNFSKP EPNFSQDLDY DDEFDDDRAE REGFNPRIQS SRSSSRVNGY
201: SRKDGSYPRN TGASNGYGSS SRFKHEQMNA AAEVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKS RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPVS

Arabidopsis Description

FIP2Protein FIP2 [Source:UniProtKB/Swiss-Prot;Acc:O23550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.