CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71514	Canola	nucleus	92.83	94.68
AT3G54390.2	Thale cress	nucleus	60.59	59.62
CDX83751	Canola	nucleus	23.78	55.3
VIT_13s0084g00800.t01	Wine grape	nucleus	57.0	54.86
KRH30077	Soybean	nucleus	55.37	49.85
KRH20709	Soybean	nucleus	52.77	49.69
KRH13365	Soybean	nucleus	53.42	49.1
KRH62829	Soybean	nucleus	57.33	48.35
Solyc01g096470.2.1	Tomato	nucleus	52.12	46.65
PGSC0003DMT400013829	Potato	nucleus	49.84	44.48
GSMUA_Achr4P05890_001	Banana	nucleus	39.09	39.22
GSMUA_Achr9P22780_001	Banana	mitochondrion	36.81	32.85
KXG36174	Sorghum	cytosol	35.83	32.64
Os09t0558200-01	Rice	cytosol	35.5	32.44
Zm00001d021389_P001	Maize	cytosol	34.85	31.94
Zm00001d006331_P001	Maize	cytosol	34.2	31.44
HORVU5Hr1G088750.1	Barley	cytosol	15.96	31.41
TraesCS5D01G369500.2	Wheat	nucleus	34.85	30.57
TraesCS5A01G360100.1	Wheat	nucleus	34.85	30.48
TraesCS5B01G362600.2	Wheat	nucleus	34.53	30.37
HORVU5Hr1G088770.7	Barley	nucleus	35.5	29.86
CDY48253	Canola	nucleus	14.33	24.58
CDY39785	Canola	nucleus	21.17	23.38
CDX74679	Canola	nucleus	22.48	22.85
CDY42958	Canola	nucleus	21.17	20.97
CDX95611	Canola	nucleus	24.1	20.96
CDY52087	Canola	nucleus, plastid	20.2	20.88
CDX77381	Canola	nucleus	19.54	20.2
CDX83420	Canola	nucleus	22.48	19.6
CDY35602	Canola	cytosol	20.85	15.46

Protein Annotations

EnsemblPlants:CDX73485	EnsemblPlantsGene:GSBRNA2T00109000001	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF7	PFAM:PF13837
ProteinID:CDX73485	ProteinID:CDX73485.1	SEG:seg	UniParc:UPI0004EF3E20	MapMan:15.5.20	:

Description

BnaC08g25180D

Coordinates

chrLK031799:+:669428..673023

Molecular Weight (calculated)

34504.9 Da

IEP (calculated)

9.858

GRAVY (calculated)

-0.902

Length

307 amino acids

Sequence
(BLAST)

001: MEDGDSNQEH PQPLTTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWVLR NRAKLKGQDW EDVARHVSSR ASHSKSPKTQ TQCKNKIESM
101: KKRYRSESAT ADGSSWPLYS RLDHLLRGNA STSVQPQPQA VLPLNCSAPL LLLEPPSLAV THPPQQPPAA QMSHGSNGVG TIKEEGFKDD HKPERATEMD
201: TDSSTPVLCR EKAKVRPKKV RRRYKEEKEE IAGSIRWLAE VVMRTERARM ETMKEIEKMR AEAEVKRGEM DLKRTEIMAN TQIEIARLFA ASVQKGGVDS
301: SLRIGRN

Best Arabidopsis Sequence Match ( AT3G54390.2 )
(BLAST)

001: MFNSIHSLKS HLKKKYMENG ESNQENLKSL NHDESLKKPS ASSVVVDRLK RDEWSEGAVS TLLEAYESKW VLRNRAKLKG QDWEDVAKHV SSRATHTKSP
101: KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDHLLR GTQPQPQPQA VLPLNCSVPL LLLEPPLPAV AHPPQISYGS NGVGKIPKED GFKPENKPEK
201: DAEMDTDSST PVVKTKVRGK KVKRRYKEEK EEIAGSIRWL AEVVMRSERA RMETMKEIER MRAEAEAKRG ELDLKRTEIM ANTQLEIARI FAAAASSGQN
301: KGVDSSLRIG RN

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.