Factsheet for Solyc01g096470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013829	Potato	nucleus	72.01	71.8
CDY71514	Canola	nucleus	46.94	53.49
CDX73485	Canola	nucleus	46.65	52.12
Bra007069.1-P	Field mustard	nucleus	46.94	51.77
VIT_13s0084g00800.t01	Wine grape	nucleus	47.81	51.41
AT3G54390.2	Thale cress	nucleus	46.36	50.96
CDX83751	Canola	nucleus	18.95	49.24
KRH20709	Soybean	nucleus	46.36	48.77
KRH30077	Soybean	nucleus	48.4	48.68
KRH13365	Soybean	nucleus	45.77	47.01
KRH62829	Soybean	nucleus	49.85	46.98
GSMUA_Achr4P05890_001	Banana	nucleus	34.69	38.89
GSMUA_Achr9P22780_001	Banana	mitochondrion	33.53	33.43
TraesCS5B01G362600.2	Wheat	nucleus	32.94	32.38
TraesCS5A01G360100.1	Wheat	nucleus	32.65	31.91
TraesCS5D01G369500.2	Wheat	nucleus	32.36	31.71
Zm00001d006331_P001	Maize	cytosol	30.61	31.44
Zm00001d021389_P001	Maize	cytosol	30.61	31.34
Os09t0558200-01	Rice	cytosol	30.61	31.25
KXG36174	Sorghum	cytosol	30.61	31.16
HORVU5Hr1G088750.1	Barley	cytosol	13.7	30.13
HORVU5Hr1G088770.7	Barley	nucleus	30.9	29.04
Solyc01g088820.2.1	Tomato	plastid	18.37	19.15
Solyc06g083430.1.1	Tomato	nucleus	18.08	19.08
Solyc08g007170.1.1	Tomato	nucleus	18.66	15.69

Protein Annotations

EnsemblPlants:Solyc01g096470.2.1	EnsemblPlantsGene:Solyc01g096470.2	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF7	PFAM:PF13837
SEG:seg	UniParc:UPI0002767A68	UniProt:K4B035	MapMan:15.5.20	:	:

Description

No Description!

Coordinates

chr1:+:87557680..87559949

Molecular Weight (calculated)

37866.7 Da

IEP (calculated)

9.765

GRAVY (calculated)

-0.790

Length

343 amino acids

Sequence
(BLAST)

001: MDKEAANHHQ NHEISNKDEF SPRIKPLQNY HVPTGNSDRL KRDEWSEGAV SCLLEAYEAK WILRNRAKLK GQDWEDVAKH VSARVYSTKS PKTQTQCKNK
101: IESMKKRYRS ESATAADASS WPLYPRLDLL LRGNNASAAS SSLIPPPPLP PNTNCVIDAV EPPPQQPILL PPPPATLPPP PPLPPSPALP FGNGDQNSHG
201: SNGLDRGIKE DILMDAKLSD NAAAPDQKNA TATNSSSTPA LYSDNKSKSK LRSKNKRKRA VEGWEIGESI RLLAEVVVRS EQARMETMRD IERMRAEAEA
301: KRGEMDLKRT EIIANTQLEI AKLFASITKG SVDSSLRIGR SSS

Best Arabidopsis Sequence Match ( AT3G54390.2 )
(BLAST)

001: MFNSIHSLKS HLKKKYMENG ESNQENLKSL NHDESLKKPS ASSVVVDRLK RDEWSEGAVS TLLEAYESKW VLRNRAKLKG QDWEDVAKHV SSRATHTKSP
101: KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDHLLR GTQPQPQPQA VLPLNCSVPL LLLEPPLPAV AHPPQISYGS NGVGKIPKED GFKPENKPEK
201: DAEMDTDSST PVVKTKVRGK KVKRRYKEEK EEIAGSIRWL AEVVMRSERA RMETMKEIER MRAEAEAKRG ELDLKRTEIM ANTQLEIARI FAAAASSGQN
301: KGVDSSLRIG RN

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.