Factsheet for Solyc01g088820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004269	Potato	plastid	94.53	94.53
KRH50980	Soybean	nucleus	17.93	49.58
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	44.38	45.62
KRH41794	Soybean	nucleus	44.38	44.92
CDY48253	Canola	nucleus	23.71	43.58
KRH40215	Soybean	nucleus	42.25	43.17
Bra004859.1-P	Field mustard	nucleus	38.3	41.72
CDX74679	Canola	nucleus	38.3	41.72
GSMUA_Achr11P...	Banana	plastid	36.47	37.15
CDX83420	Canola	nucleus	39.21	36.65
CDX95611	Canola	nucleus	39.21	36.54
Bra000360.1-P	Field mustard	nucleus	38.91	35.96
AT2G44730.1	Thale cress	nucleus	39.51	34.95
KRH01003	Soybean	nucleus	26.75	32.59
GSMUA_Achr11P...	Banana	nucleus	20.67	31.05
Solyc06g083430.1.1	Tomato	nucleus	29.79	30.15
Solyc08g007170.1.1	Tomato	nucleus	32.22	25.98
Solyc01g096470.2.1	Tomato	nucleus	19.15	18.37

Protein Annotations

MapMan:15.5.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019748	GO:GO:0019760	GO:GO:0043565
GO:GO:0044212	InterPro:IPR006578	InterPro:IPR017877	UniProt:K4AYS2	InterPro:MADF-dom	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	SMART:SM00595	EnsemblPlantsGene:Solyc01g088820.2
EnsemblPlants:Solyc01g088820.2.1	UniParc:UPI0002761B55	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:83548608..83549868

Molecular Weight (calculated)

37289.7 Da

IEP (calculated)

9.814

GRAVY (calculated)

-0.752

Length

329 amino acids

Sequence
(BLAST)

001: MATFSPSTRD FSTNPSQILS SSNVTVAVPS RRLPPPCWSH DETIALIDAY RDKWYSLRKG NLRANHWQEV ADDVGSRCPV DPPKTAVQCR HKMEKLRKRY
101: RAEIQRAAPY GGPRSHRYCS AWVHFKRMDM MERGPNAVSP PPSEDEADED VEDYHQNGVK LVGDLYGNNV HAGNRSSFQG VVSNGGGGFR IRIPGMPGLA
201: PPMAKPYSRF EEARVETPSN FGSSQMFRDG FVKKADLGKR VVGEGVREKK KEDPMVEMVA AIKVLGDGFV RMERMKMDAA RELERMRMEM EMKRTEMILE
301: SQQRVVEAFA QALSEKKYKK AKRMPTPEC

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.