CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01003	Soybean	nucleus	52.48	62.59
KRH41794	Soybean	nucleus	54.66	54.15
KRH50980	Soybean	nucleus	19.88	53.78
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	46.27	46.56
CDY48253	Canola	nucleus	25.47	45.81
CDX74679	Canola	nucleus	40.37	43.05
Bra004859.1-P	Field mustard	nucleus	40.06	42.72
PGSC0003DMT400004269	Potato	plastid	43.48	42.55
Solyc01g088820.2.1	Tomato	plastid	43.17	42.25
GSMUA_Achr11P...	Banana	plastid	39.13	39.01
CDX83420	Canola	nucleus	39.44	36.08
Bra000360.1-P	Field mustard	nucleus	39.44	35.67
AT2G44730.1	Thale cress	nucleus	40.99	35.48
CDX95611	Canola	nucleus	38.82	35.41
GSMUA_Achr11P...	Banana	nucleus	22.36	32.88
KRH07500	Soybean	cytosol, mitochondrion, nucleus	26.4	31.95
KRH66081	Soybean	cytosol	26.4	30.36
KRH30077	Soybean	nucleus	22.05	20.82
KRH13365	Soybean	nucleus	21.43	20.66
KRH20709	Soybean	nucleus	20.81	20.55
KRH62829	Soybean	nucleus	21.74	19.23

Protein Annotations

EMBL:ACUP02006028	EnsemblPlants:KRH40215	EnsemblPlantsGene:GLYMA_09G245300	EntrezGene:102665993	Gene3D:1.10.10.60	InterPro:IPR006578
InterPro:IPR017877	InterPro:MADF-dom	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3
PFAM:PF13837	PFscan:PS50090	ProteinID:KRH40215	ProteinID:KRH40215.1	SEG:seg	SMART:SM00595
UniParc:UPI00023C9D13	UniProt:I1L649	MapMan:15.5.20	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46740063..46743249

Molecular Weight (calculated)

36041.6 Da

IEP (calculated)

10.214

GRAVY (calculated)

-0.960

Length

322 amino acids

Sequence
(BLAST)

001: MASPSSPTDS NPPSALPLPI PPPPSTSSRR LPPPCWTPEE TSALIDAYRD KWYSLGRTNL KATHWQEVAD SVTAQCPNAS PTAKTPVQCR HKMEKLRKRY
101: RTEIQRLRNL PLPRLNNAST NSPSSWLHFK SMDSMEKGPN HKPHADNNLN INNNFHDDDV DDDDLYEEFK NAPGSNTRSL NKLYKNNNGF NSAGSGSGSG
201: FRIRIPAGVP QQQHHTASSN KIFNSHPPPG MGPRGGGVKR ERERDAVAEM VGAIKVLRDG FVRMEQMKME MAREIESMRM EMEMKRTEMI LDSQQRIVEA
301: FARAVSQKRT KGKSTPSPSS QP

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.