CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000360.1-P	Field mustard	nucleus	93.47	92.42
CDX95611	Canola	nucleus	81.25	81.02
CDX74679	Canola	nucleus	52.27	60.93
CDY48253	Canola	nucleus	30.97	60.89
AT2G44730.1	Thale cress	nucleus	57.1	54.03
KRH50980	Soybean	nucleus	15.06	44.54
KRH41794	Soybean	nucleus	40.62	44.0
PGSC0003DMT400004269	Potato	plastid	38.35	41.03
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	36.65	40.31
KRH40215	Soybean	nucleus	36.08	39.44
Solyc01g088820.2.1	Tomato	plastid	36.65	39.21
GSMUA_Achr11P...	Banana	plastid	31.82	34.67
GSMUA_Achr11P...	Banana	nucleus	20.17	32.42
CDY42958	Canola	nucleus	28.12	31.94
KRH01003	Soybean	nucleus	22.16	28.89
CDY52087	Canola	nucleus, plastid	23.86	28.28
CDY39785	Canola	nucleus	22.16	28.06
CDX77381	Canola	nucleus	23.58	27.95
CDX83751	Canola	nucleus	9.94	26.52
CDY35602	Canola	cytosol	29.55	25.12
CDY71514	Canola	nucleus	19.89	23.26
CDX73485	Canola	nucleus	19.6	22.48

Protein Annotations

EnsemblPlants:CDX83420	EnsemblPlantsGene:GSBRNA2T00138994001	Gene3D:1.10.10.60	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837
PFscan:PS50090	ProteinID:CDX83420	ProteinID:CDX83420.1	SEG:seg	SMART:SM00595	SMART:SM00717
UniParc:UPI0004EE7C5C	MapMan:15.5.20	:	:	:	:

Description

BnaA03g20860D

Coordinates

chrLK031832:+:1491058..1492620

Molecular Weight (calculated)

38896.5 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.821

Length

352 amino acids

Sequence
(BLAST)

001: MSDPDSPLEQ DPLPVRNQSP PPQPDDSVTD LKIASTPAAV ATKNSRRLPP PCWSLEETIA LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK
101: TAVQCRHKME KLRKRYRTEI QRARSVPVAR FVSSWVHYKR MEAMEDHPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN GTAGGSSSSG GIRIRIPTGV
201: SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV RIQEGGGGGE ERAGKRGREM MMMMTTEEEE SDDPMVEIAS AIKLLGDTLL RTEEKKMEMT
301: REIEAMRMEM EMKRTKMILE SQQRIIEAFA KSMSENLEEK KKKARRVSSL PP

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.