CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67755
CDX71939
CDX90788
CDX94243
CDX98311
CDY05122

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	CDX67755	AT3G58630.1	21798944
AT3G24860.1	CDX71939	AT3G58630.1	21798944
AT3G24860.1	CDX98311	AT3G58630.1	21798944
AT3G24860.1	CDX90788	AT4G10840.1	21798944
AT3G24860.1	CDX94243	AT4G10840.1	21798944
AT3G24860.1	CDY05122	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77381	Canola	nucleus	85.19	85.19
AT3G24860.1	Thale cress	nucleus	66.67	63.87
CDY39785	Canola	nucleus	57.24	61.15
VIT_07s0005g06670.t01	Wine grape	nucleus	34.68	36.52
KRH07500	Soybean	cytosol, mitochondrion, nucleus	31.31	34.96
KRH66081	Soybean	cytosol	29.97	31.79
GSMUA_Achr6P04170_001	Banana	nucleus	28.96	31.73
CDY48253	Canola	nucleus	18.18	30.17
Solyc06g083430.1.1	Tomato	nucleus	31.65	28.92
PGSC0003DMT400051788	Potato	nucleus	31.31	28.53
TraesCS5B01G564200.1	Wheat	nucleus	26.26	25.32
CDX74679	Canola	nucleus	25.25	24.83
Zm00001d031266_P001	Maize	nucleus	26.6	24.76
Zm00001d052798_P001	Maize	nucleus	23.57	23.97
CDX83420	Canola	nucleus	28.28	23.86
TraesCS5D01G550500.1	Wheat	nucleus	24.24	23.68
CDX83751	Canola	nucleus	10.44	23.48
EES15479	Sorghum	nucleus	24.58	23.1
TraesCS4A01G315300.1	Wheat	nucleus	23.91	23.05
Os08t0484700-01	Rice	nucleus	24.24	22.86
CDX95611	Canola	nucleus	26.94	22.66
CDY42958	Canola	nucleus	23.57	22.58
CDY71514	Canola	nucleus	21.89	21.59
CDX73485	Canola	nucleus	20.88	20.2
CDY35602	Canola	cytosol	22.56	16.18

Protein Annotations

EnsemblPlants:CDY52087	EnsemblPlantsGene:GSBRNA2T00004890001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR31307
PANTHER:PTHR31307:SF17	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY52087	ProteinID:CDY52087.1	SEG:seg
UniParc:UPI0004EE0630	UniProt:A0A078IQB4	MapMan:15.5.20	:	:	:

Description

BnaCnng21880DBnaCnng21880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQB4]

Coordinates

chrLK033055:+:40070..41039

Molecular Weight (calculated)

33416.6 Da

IEP (calculated)

10.214

GRAVY (calculated)

-0.891

Length

297 amino acids

Sequence
(BLAST)

001: MATPSPTPSP PPPPPSDSNP NPPQQNPPPS NSTAIQTPRS PQTTVVALGA STSAFARKTQ PVLWTEDETL LLIDSYKEKW YAVGRGPLKS NQWEEISVSV
101: SARSGVERSA TQCRHKMEKL RKRFRAERQS MGPISIWPFY SQMEELDSNP APISARPLTR LPPPSNHYAE DEDDDDDYED ESLNKSRSIN HIVRRPGTVN
201: RFAGVGGGLL QWGQKERSKR KKKDEGGGGE RRMKGARAVA YEIRAFAEKT MVMENKKMEF AKETVKLRKE MEMKRLKLIQ SSQAQLLQFL NTSFASF

Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)

001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.