Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G550500.1 | Wheat | nucleus | 79.87 | 80.92 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 77.6 | 77.6 |
| EES15479 | Sorghum | nucleus | 53.25 | 51.9 |
| Os08t0484700-01 | Rice | nucleus | 52.27 | 51.11 |
| Zm00001d031266_P001 | Maize | nucleus | 51.62 | 49.84 |
| Zm00001d052798_P001 | Maize | nucleus | 45.78 | 48.29 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 36.36 | 41.33 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 28.57 | 31.21 |
| KRH66081 | Soybean | cytosol | 24.68 | 27.14 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 23.05 | 26.69 |
| Solyc06g083430.1.1 | Tomato | nucleus | 27.92 | 26.46 |
| CDY52087 | Canola | nucleus, plastid | 25.32 | 26.26 |
| CDX77381 | Canola | nucleus | 25.32 | 26.26 |
| Bra015090.1-P | Field mustard | nucleus | 25.32 | 26.26 |
| CDY39785 | Canola | nucleus | 23.7 | 26.26 |
| PGSC0003DMT400051788 | Potato | nucleus | 26.95 | 25.46 |
| AT3G24860.1 | Thale cress | nucleus | 25.32 | 25.16 |
| TraesCS1B01G229500.1 | Wheat | nucleus | 25.65 | 24.92 |
| TraesCS5B01G362600.2 | Wheat | nucleus | 21.1 | 18.62 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G564200.1 | EnsemblPlantsGene:TraesCS5B01G564200 | Gene3D:1.10.10.60 | InterPro:IPR006578 | InterPro:MADF-dom | ncoils:Coil |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | PFAM:PF13837 | SEG:seg | SMART:SM00595 | MapMan:15.5.20 |
Description
No Description!
Coordinates
chr5B:-:709583640..709584566
Molecular Weight (calculated)
35320.7 Da
IEP (calculated)
5.068
GRAVY (calculated)
-1.237
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARKSAPGQ PWSDGETMHL IDVYEDRWTR LRRGQLKAHQ WEDVAADVTR RCGGQRKTGT QCRHKLEKLR KRYRTEAARP VTSLWPFFRR MERLERGPVP
101: VSTNSFPASP PASDDDQDQD QDHDLDLDLD QEEEEEDEEE EEDGEEDQEE EEEEQLLVAR NRSINGLVRD AGGFRGHQQQ QQRRRPSPPA VTLSTAPPRK
201: RVSYEAAMFQ SKAAAADRVK AEEAPAVDHH SVAGVLRDIG EGIKRLERRR MEVQWEIERG WKETEARSNQ MLQDAQRQLQ DTLATLPPTG KKARRDHGSS
301: ADGLQEAS
101: VSTNSFPASP PASDDDQDQD QDHDLDLDLD QEEEEEDEEE EEDGEEDQEE EEEEQLLVAR NRSINGLVRD AGGFRGHQQQ QQRRRPSPPA VTLSTAPPRK
201: RVSYEAAMFQ SKAAAADRVK AEEAPAVDHH SVAGVLRDIG EGIKRLERRR MEVQWEIERG WKETEARSNQ MLQDAQRQLQ DTLATLPPTG KKARRDHGSS
301: ADGLQEAS
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.