Factsheet for Os08t0484700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0674000-01
Os02t0109800-01
Os05t0560600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	Os01t0674000-01	AT3G58630.1	21798944
AT3G24860.1	Os05t0560600-01	AT3G58630.1	21798944
AT3G24860.1	Os02t0109800-01	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15479	Sorghum	nucleus	56.51	56.33
Zm00001d052798_P001	Maize	nucleus	50.48	54.45
Zm00001d031266_P001	Maize	nucleus	53.97	53.29
TraesCS5D01G550500.1	Wheat	nucleus	51.43	53.29
TraesCS5B01G564200.1	Wheat	nucleus	51.11	52.27
TraesCS4A01G315300.1	Wheat	nucleus	49.52	50.65
GSMUA_Achr6P04170_001	Banana	nucleus	40.63	47.23
VIT_07s0005g06670.t01	Wine grape	nucleus	30.79	34.4
KRH07500	Soybean	cytosol, mitochondrion, nucleus	26.67	31.58
KRH66081	Soybean	cytosol	27.3	30.71
PGSC0003DMT400051788	Potato	nucleus	31.11	30.06
Solyc06g083430.1.1	Tomato	nucleus	30.16	29.23
Os10t0564200-01	Rice	nucleus	30.48	28.57
CDY39785	Canola	nucleus	22.22	25.18
CDY52087	Canola	nucleus, plastid	22.86	24.24
Bra015090.1-P	Field mustard	nucleus	22.54	23.91
CDX77381	Canola	nucleus	22.54	23.91
AT3G24860.1	Thale cress	nucleus	22.54	22.9
Os09t0558200-01	Rice	cytosol	17.46	16.37

Protein Annotations

EnsemblPlants:Os08t0484700-01	EnsemblPlantsGene:Os08g0484700	EntrezGene:4345874	InterPro:IPR006578	InterPro:MADF-dom	PANTHER:PTHR31307
PANTHER:PTHR31307:SF17	PFAM:PF13837	ProteinID:BAD10712.1	ProteinID:BAF23998.1	ProteinID:BAT05963.1	RefSeq:XP_015648379.1
SEG:seg	SMART:SM00595	UniParc:UPI000023B14A	UniProt:Q6YTS9	MapMan:15.5.20	:

Description

Homeodomain-like containing protein. (Os08t0484700-01)

Coordinates

chr8:+:23951421..23952900

Molecular Weight (calculated)

35064.3 Da

IEP (calculated)

7.708

GRAVY (calculated)

-0.952

Length

315 amino acids

Sequence
(BLAST)

001: MAQEAASAAA GEEGALPQRR RKSAPGQPWA HMETMHLLDA YEERWTRLRR GQLKAQQWEE VAADVAARCA ASGAALRKTG TQCRHKLEKL RKRYRIEGAR
101: PVTSLWPYFR RMERLERGPL PVSSAFPPPP PAASPPAAAS DDDDDDEEDD EEEEEVEEPI PRNNTRSING ILRDSGGGGG GFSGFAPRPP PQQPPPSFAM
201: LSTAPPRKRV PYEAFQAKVA MADKVKEEEP PPVATRPGGG TNEQLSAVLR DFGQGIMRLE RRRMEMQWEI DRGWKETEAR HNRMLLDAQR HLHEALAATP
301: PPLKKARREH GGDGS

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.