Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G550500.1 | Wheat | nucleus | 84.74 | 85.86 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 77.6 | 77.6 |
| EES15479 | Sorghum | nucleus | 54.87 | 53.48 |
| Zm00001d031266_P001 | Maize | nucleus | 52.92 | 51.1 |
| Os08t0484700-01 | Rice | nucleus | 50.65 | 49.52 |
| Zm00001d052798_P001 | Maize | nucleus | 44.81 | 47.26 |
| GSMUA_Achr6P04170_001 | Banana | nucleus | 37.01 | 42.07 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 28.9 | 31.56 |
| CDY39785 | Canola | nucleus | 23.7 | 26.26 |
| Solyc06g083430.1.1 | Tomato | nucleus | 27.27 | 25.85 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 21.75 | 25.19 |
| AT3G24860.1 | Thale cress | nucleus | 25.32 | 25.16 |
| TraesCS1A01G216300.1 | Wheat | nucleus | 25.97 | 25.08 |
| PGSC0003DMT400051788 | Potato | nucleus | 26.3 | 24.85 |
| KRH66081 | Soybean | cytosol | 22.4 | 24.64 |
| CDY52087 | Canola | nucleus, plastid | 23.05 | 23.91 |
| CDX77381 | Canola | nucleus | 23.05 | 23.91 |
| Bra015090.1-P | Field mustard | nucleus | 23.05 | 23.91 |
| TraesCS5A01G360100.1 | Wheat | nucleus | 20.13 | 17.66 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G315300.1 | EnsemblPlantsGene:TraesCS4A01G315300 | Gene3D:1.10.10.60 | InterPro:IPR006578 | InterPro:MADF-dom | ncoils:Coil |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | PFAM:PF13837 | SEG:seg | SMART:SM00595 | MapMan:15.5.20 |
Description
No Description!
Coordinates
chr4A:+:605644790..605646059
Molecular Weight (calculated)
35134.5 Da
IEP (calculated)
5.060
GRAVY (calculated)
-1.243
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARKSAPGQ PWSDGETMHL IDVYEDRWTK LRRGQLKAHQ WEDVAGEVTR RCGGQRKTGT QCRHKLEKLR KRYRTEAARP VTSLWPFFRR MERLERGPVP
101: VSTNSFPASP PASDDDQDQD LDPEEEEEDE EEQEEEDEEQ EEDQEEEEEQ LLVARNTGSH TRSINGLVRD AGGFRGHQQQ QQQQQQRRPS PPAVTLSTAP
201: PRKRVSYEAA MFQSKAAAAD RAIKAEEAPA VDHGSVAGVL RDIGEGIKRL ERRRMEVQWE IEQGWKETEA RSNQMLQDAQ RQLQDTLAAL PPPGKKARRD
301: HGSSADGL
101: VSTNSFPASP PASDDDQDQD LDPEEEEEDE EEQEEEDEEQ EEDQEEEEEQ LLVARNTGSH TRSINGLVRD AGGFRGHQQQ QQQQQQRRPS PPAVTLSTAP
201: PRKRVSYEAA MFQSKAAAAD RAIKAEEAPA VDHGSVAGVL RDIGEGIKRL ERRRMEVQWE IEQGWKETEA RSNQMLQDAQ RQLQDTLAAL PPPGKKARRD
301: HGSSADGL
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.