Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 1
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g055100.2.1
Solyc08g008460.2.1
Solyc12g010890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G24860.1 Solyc07g055100.2.1 AT3G58630.1 21798944
AT3G24860.1 Solyc12g010890.1.1 AT3G58630.1 21798944
AT3G24860.1 Solyc08g008460.2.1 AT4G10840.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400051788 Potato nucleus 92.31 92.02
VIT_07s0005g06670.t01 Wine grape nucleus 44.92 51.77
KRH07500 Soybean cytosol, mitochondrion, nucleus 37.23 45.49
KRH66081 Soybean cytosol 38.15 44.29
GSMUA_Achr6P04170_001 Banana nucleus 35.69 42.8
Bra015090.1-P Field mustard nucleus 29.23 31.99
CDX77381 Canola nucleus 29.23 31.99
Zm00001d031266_P001 Maize nucleus 31.08 31.66
CDY52087 Canola nucleus, plastid 28.92 31.65
AT3G24860.1 Thale cress nucleus 29.54 30.97
CDY39785 Canola nucleus 26.46 30.94
Zm00001d052798_P001 Maize nucleus 27.38 30.48
Os08t0484700-01 Rice nucleus 29.23 30.16
EES15479 Sorghum nucleus 29.23 30.06
Solyc01g088820.2.1 Tomato plastid 30.15 29.79
TraesCS5D01G550500.1 Wheat nucleus 26.77 28.62
TraesCS5B01G564200.1 Wheat nucleus 26.46 27.92
TraesCS4A01G315300.1 Wheat nucleus 25.85 27.27
Solyc08g007170.1.1 Tomato nucleus 27.08 21.57
Solyc01g096470.2.1 Tomato nucleus 19.08 18.08
Protein Annotations
EnsemblPlants:Solyc06g083430.1.1EnsemblPlantsGene:Solyc06g083430.1Gene3D:1.10.10.60InterPro:IPR006578InterPro:IPR017877InterPro:MADF-dom
InterPro:Myb-like_domPANTHER:PTHR31307PANTHER:PTHR31307:SF17PFAM:PF13837PFscan:PS50090SEG:seg
SMART:SM00595UniParc:UPI0002765DE5UniProt:K4CAJ8MapMan:15.5.20::
Description
No Description!
Coordinates
chr6:-:48842414..48843391
Molecular Weight (calculated)
37627.7 Da
IEP (calculated)
6.533
GRAVY (calculated)
-0.932
Length
325 amino acids
Sequence
(BLAST)
001: MATPSSPPPL LLPPPESNQP QISPNPPIPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR
101: KRYRAERLKP YPNSWQYFDL MDRMERGPLP IAAHPVAMVK CQNSNSTSDQ RYYDTDSDEV DVSFMDLRKN KCKSINHIVR GEMGMMGVNV VADNRNVNRM
201: VKDRNFDPMR GMRNSMNEKR KGYFENVGIN NDDDDVEEEA DEEEDDVDGE GSVGGSELAA EIRGFAERFM RMESKKIEMM KETERFRMEM EKRRMEMILE
301: TQRNLIDTIN SVVGSHKKVK VAHEF
Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.