Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020194 | Potato | plastid | 94.43 | 79.63 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 43.34 | 53.85 |
| KRH27047 | Soybean | nucleus | 50.15 | 52.77 |
| KRH22283 | Soybean | nucleus | 49.23 | 51.96 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 68.42 | 51.52 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 42.41 | 50.74 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 38.7 | 50.61 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 38.7 | 49.6 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 38.39 | 48.63 |
| Solyc02g076810.2.1 | Tomato | cytosol | 42.11 | 48.4 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 43.03 | 47.44 |
| CDX71939 | Canola | nucleus, plastid | 42.72 | 45.85 |
| Bra003346.1-P | Field mustard | nucleus | 43.03 | 45.42 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 48.61 | 45.24 |
| CDX98311 | Canola | nucleus | 43.03 | 44.55 |
| CDX67755 | Canola | nucleus | 43.34 | 44.3 |
| AT3G58630.1 | Thale cress | nucleus | 43.65 | 43.93 |
| Solyc06g051120.2.1 | Tomato | nucleus | 33.75 | 42.58 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 37.46 | 37.93 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 37.15 | 37.74 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 37.15 | 37.74 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 36.84 | 37.66 |
| EES03423 | Sorghum | cytosol | 36.22 | 36.91 |
| Zm00001d011571_P001 | Maize | cytosol | 35.91 | 36.83 |
| Zm00001d043902_P001 | Maize | nucleus | 35.91 | 36.48 |
| Os05t0560600-01 | Rice | nucleus | 39.01 | 36.42 |
| EES18672 | Sorghum | nucleus | 38.08 | 35.45 |
| Zm00001d038994_P001 | Maize | cytosol | 37.46 | 35.28 |
| Os01t0674000-01 | Rice | nucleus | 35.29 | 34.34 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 36.53 | 33.43 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 36.22 | 33.14 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 36.22 | 32.87 |
| Solyc03g122030.1.1 | Tomato | nucleus | 32.82 | 29.2 |
| Zm00001d030350_P001 | Maize | nucleus | 18.89 | 29.05 |
| Solyc12g043090.1.1 | Tomato | nucleus | 25.08 | 21.6 |
| Solyc05g018350.2.1 | Tomato | nucleus | 22.6 | 20.68 |
Protein Annotations
| EnsemblPlants:Solyc12g010890.1.1 | EnsemblPlantsGene:Solyc12g010890.1 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 | PFAM:PF13837 |
| SEG:seg | UniParc:UPI0002769FF5 | UniProt:K4DCH5 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chr12:-:3792736..3796034
Molecular Weight (calculated)
35827.4 Da
IEP (calculated)
9.518
GRAVY (calculated)
-0.694
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDDLVASP SSNNNSPSPS PSPPPSSVKN ELATLPPPPM IPPASTRPAA FPAREDCWSE AATHTLIEAW GSLYVELKRG NLRQKHWQEV ANAVNKLHGN
101: TKKQFRTDIQ CKNRIDTLKK KYKIEKARVS QSHSRYVPQW PFFNSLDVLI GDNFKPSPLP VTVAPRRKTP PLLPPPTSAV PVGPRSKRPA AVMEDVVSRR
201: NFSAMAAAAA AAASEDSDEE EESETSSPAT FTASAPSRRK ESGALAEGCS RLAEAIGRFA EIYERVEDAK QRQMVELEKQ RMQFAKDLEI QRMKLIMESQ
301: VQLEKLKRAK NSSQADGYLY KEC
101: TKKQFRTDIQ CKNRIDTLKK KYKIEKARVS QSHSRYVPQW PFFNSLDVLI GDNFKPSPLP VTVAPRRKTP PLLPPPTSAV PVGPRSKRPA AVMEDVVSRR
201: NFSAMAAAAA AAASEDSDEE EESETSSPAT FTASAPSRRK ESGALAEGCS RLAEAIGRFA EIYERVEDAK QRQMVELEKQ RMQFAKDLEI QRMKLIMESQ
301: VQLEKLKRAK NSSQADGYLY KEC
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.