Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080593 | Potato | nucleus | 95.2 | 95.45 |
| VIT_09s0002g04700.t01 | Wine grape | nucleus | 69.07 | 61.37 |
| KRH23479 | Soybean | nucleus | 56.27 | 54.95 |
| KRH09846 | Soybean | nucleus | 55.2 | 52.14 |
| Solyc05g018350.2.1 | Tomato | nucleus | 42.93 | 45.61 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 37.6 | 40.4 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 35.2 | 37.71 |
| Os01t0718900-01 | Rice | nucleus | 31.47 | 36.65 |
| TraesCS3B01G274700.1 | Wheat | nucleus, plastid | 27.73 | 33.33 |
| TraesCS3A01G245400.1 | Wheat | nucleus, plastid | 27.73 | 33.12 |
| Solyc06g051120.2.1 | Tomato | nucleus | 22.4 | 32.81 |
| TraesCS3D01G246100.1 | Wheat | nucleus, plastid | 27.2 | 32.28 |
| OQU87430 | Sorghum | nucleus, plastid | 28.53 | 30.48 |
| Solyc02g076810.2.1 | Tomato | cytosol | 21.33 | 28.47 |
| Zm00001d011730_P001 | Maize | nucleus, plastid | 26.13 | 28.0 |
| Solyc12g010890.1.1 | Tomato | nucleus | 21.6 | 25.08 |
| Solyc03g122030.1.1 | Tomato | nucleus | 23.73 | 24.52 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 22.67 | 19.81 |
Protein Annotations
| EnsemblPlants:Solyc12g043090.1.1 | EnsemblPlantsGene:Solyc12g043090.1 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF6 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | UniParc:UPI0002769446 |
| UniProt:K4DF97 | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:39125695..39126822
Molecular Weight (calculated)
42889.2 Da
IEP (calculated)
4.633
GRAVY (calculated)
-1.225
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDIEDNGRY PSNPYGMNQG YESSNRQKLP VHDPSYSRHV DNQYVEEADD DEEVDGEEEE EDDDGEENGV QRIGKDVFDD DDDDDDEYGD LQRHQKKRKL
101: KSLLSSYEFA PRVPPPSTTA ATAPKPSFGG RNPLSDWSEN ETFILLDAWG TRFVRHGRKS LRSEEWQEVA DRVSRGSKIE RTDTQCRNRL DTLKKKYKKE
201: KMKFAETGSS TSKWVYFKKM DMLLTSTPQK AGVSCGMDSG EYVFMSPKAY LNRANGLDEM RDSPANSESA DGEEDGSEDL PPKRSRNVQP GGNGNGNGHS
301: FKLIADSIHK FSEIYVKIEN SKRQQMMELE KMRMDFHREL ELQKRQIMER AQAEIARIRQ GSDEENDMSA ENVSG
101: KSLLSSYEFA PRVPPPSTTA ATAPKPSFGG RNPLSDWSEN ETFILLDAWG TRFVRHGRKS LRSEEWQEVA DRVSRGSKIE RTDTQCRNRL DTLKKKYKKE
201: KMKFAETGSS TSKWVYFKKM DMLLTSTPQK AGVSCGMDSG EYVFMSPKAY LNRANGLDEM RDSPANSESA DGEEDGSEDL PPKRSRNVQP GGNGNGNGHS
301: FKLIADSIHK FSEIYVKIEN SKRQQMMELE KMRMDFHREL ELQKRQIMER AQAEIARIRQ GSDEENDMSA ENVSG
001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.