Factsheet for TraesCS3D01G246100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G274700.1	Wheat	nucleus, plastid	95.89	97.12
TraesCS3A01G245400.1	Wheat	nucleus, plastid	96.2	96.82
Os01t0718900-01	Rice	nucleus	65.51	64.29
OQU87430	Sorghum	nucleus, plastid	56.96	51.28
Zm00001d011730_P001	Maize	nucleus, plastid	56.01	50.57
GSMUA_Achr8P26150_001	Banana	nucleus	31.01	28.0
GSMUA_Achr8P04010_001	Banana	nucleus	30.38	27.51
PGSC0003DMT400080593	Potato	nucleus	32.28	27.27
Solyc12g043090.1.1	Tomato	nucleus	32.28	27.2
VIT_11s0016g04130.t01	Wine grape	nucleus	30.7	26.5
AT3G24490.1	Thale cress	nucleus	27.85	26.43
CDX93016	Canola	nucleus	16.46	26.26
KRH48419	Soybean	nucleus	28.16	24.72
VIT_09s0002g04700.t01	Wine grape	nucleus	32.59	24.41
CDX94808	Canola	nucleus	24.68	24.3
KRH23479	Soybean	nucleus	29.11	23.96
PGSC0003DMT400070593	Potato	nucleus	26.58	23.86
Solyc05g018350.2.1	Tomato	nucleus	26.58	23.8
Bra001951.1-P	Field mustard	nucleus	25.32	23.6
KRH09846	Soybean	nucleus	29.11	23.17
KRH39263	Soybean	nucleus	28.16	22.42
TraesCS6D01G184500.2	Wheat	nucleus	27.53	20.91
TraesCS3D01G271000.1	Wheat	nucleus	19.3	19.18
TraesCS2D01G311800.1	Wheat	nucleus, plastid	24.37	18.64
TraesCS1D01G400500.1	Wheat	nucleus	20.25	18.13

Protein Annotations

EnsemblPlants:TraesCS3D01G246100.1	EnsemblPlantsGene:TraesCS3D01G246100	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF6	PFAM:PF13837
SEG:seg	MapMan:15.5.20	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:343449753..343454679

Molecular Weight (calculated)

35359.6 Da

IEP (calculated)

8.625

GRAVY (calculated)

-0.771

Length

316 amino acids

Sequence
(BLAST)

001: MDHDAAAASP SASPSSSGAS PSPRSKRRRT DRYALGFEFA PRSAPSAPAP RTTPEWTEES TFALLDAWGE RFACDGRRSL SADEWLEVSR IVAAAASRPA
101: GYFSESQCRN RIDTLRKMFR KEKERSRLAA HRSSNPSPTK WVYFDKMLSV MCPPTPTPTP PPLLPPLTPL VTRRRDTHPV PRRSWGVDVG ELVLAGCSKV
201: VPGNSVPDAQ LRGKQTYEAG AVQGEEFAIL TEAIHRLREV YERVESSRRQ HMAELKRMRK DMQRDLEVRR REILEKAQME IASLEEEDAK EGAVNNRLED
301: HNGVEEQNNG ALDASP

Best Arabidopsis Sequence Match ( AT3G24490.1 )
(BLAST)

001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.