Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93016 | Canola | nucleus | 57.32 | 92.93 |
| Bra001951.1-P | Field mustard | nucleus | 96.88 | 91.74 |
| AT3G24490.1 | Thale cress | nucleus | 80.69 | 77.78 |
| KRH48419 | Soybean | nucleus | 52.34 | 46.67 |
| PGSC0003DMT400070593 | Potato | nucleus | 46.73 | 42.61 |
| Solyc05g018350.2.1 | Tomato | nucleus | 46.11 | 41.93 |
| KRH39263 | Soybean | nucleus | 51.71 | 41.81 |
| VIT_11s0016g04130.t01 | Wine grape | nucleus | 45.79 | 40.16 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 33.96 | 31.23 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 31.15 | 28.57 |
| Os01t0718900-01 | Rice | nucleus | 27.1 | 27.02 |
| TraesCS3B01G274700.1 | Wheat | nucleus, plastid | 25.23 | 25.96 |
| TraesCS3A01G245400.1 | Wheat | nucleus, plastid | 25.23 | 25.8 |
| CDY36316 | Canola | nucleus | 19.94 | 25.4 |
| TraesCS3D01G246100.1 | Wheat | nucleus, plastid | 24.3 | 24.68 |
| CDY00995 | Canola | nucleus | 19.0 | 23.83 |
| OQU87430 | Sorghum | nucleus, plastid | 25.86 | 23.65 |
| CDX70144 | Canola | cytosol | 18.07 | 23.2 |
| CDY51405 | Canola | nucleus | 9.03 | 22.83 |
| Zm00001d011730_P001 | Maize | nucleus, plastid | 23.68 | 21.71 |
| CDX98311 | Canola | nucleus | 20.56 | 21.15 |
| CDY02487 | Canola | nucleus, plastid | 20.25 | 21.1 |
| CDY61477 | Canola | nucleus, plastid | 19.31 | 20.6 |
| CDX71939 | Canola | nucleus, plastid | 19.31 | 20.6 |
| CDX67755 | Canola | nucleus | 20.25 | 20.57 |
| CDY08216 | Canola | nucleus | 20.56 | 20.12 |
| CDY33246 | Canola | nucleus | 19.0 | 19.93 |
| CDX98849 | Canola | cytosol | 18.69 | 19.54 |
| CDY39101 | Canola | nucleus, plastid | 18.07 | 19.02 |
| CDY26148 | Canola | nucleus, plastid | 20.87 | 18.77 |
| CDY39099 | Canola | nucleus | 17.45 | 17.67 |
| CDX75751 | Canola | nucleus | 20.25 | 17.47 |
| CDY33093 | Canola | cytosol, plastid | 19.94 | 14.65 |
Protein Annotations
| EnsemblPlants:CDX94808 | EnsemblPlantsGene:GSBRNA2T00158294001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF8 | PFAM:PF13837 |
| ProteinID:CDX94808 | ProteinID:CDX94808.1 | SEG:seg | UniParc:UPI0004EDBF90 | MapMan:15.5.20 | : |
Description
BnaC03g43800D
Coordinates
chrLK031885:-:144750..145889
Molecular Weight (calculated)
37490.1 Da
IEP (calculated)
4.630
GRAVY (calculated)
-1.349
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEED DDEEEQEDDG GGGYSHRERF QKRLKPTKHD FSSGPSETKA EQEAFVVLEV WGDRFLQLGR
101: RSLRNEDWNE VAEKVSEELR SERSETQCRR MVDNLKRKYK KERIKVDKSG LGSSKWSFFN KMDMLLGGGS SAKPEFGLAC GVDSGEFVFM NTKVYLEKSN
201: GFDEMMDSPG DSEEDDEEEY ERRRKKGDDA ASYKLLAESV ERFGKVFEKM ERSKKEQMKE LEKMRGEFQR DLELQKKQIV ERAQSEIARL REEEEENHHD
301: DGGGESEDEG MENDSDVNLS D
101: RSLRNEDWNE VAEKVSEELR SERSETQCRR MVDNLKRKYK KERIKVDKSG LGSSKWSFFN KMDMLLGGGS SAKPEFGLAC GVDSGEFVFM NTKVYLEKSN
201: GFDEMMDSPG DSEEDDEEEY ERRRKKGDDA ASYKLLAESV ERFGKVFEKM ERSKKEQMKE LEKMRGEFQR DLELQKKQIV ERAQSEIARL REEEEENHHD
301: DGGGESEDEG MENDSDVNLS D
001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.