Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009119.1-P | Field mustard | nucleus | 93.6 | 93.23 |
| CDX98849 | Canola | cytosol | 89.6 | 72.96 |
| AT5G05550.2 | Thale cress | nucleus | 65.6 | 65.86 |
| CDY36316 | Canola | nucleus | 62.4 | 61.9 |
| CDY00995 | Canola | nucleus | 60.8 | 59.38 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 44.4 | 43.7 |
| Solyc06g051120.2.1 | Tomato | nucleus | 44.0 | 42.97 |
| PGSC0003DMT400077199 | Potato | cytosol | 44.4 | 40.66 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 40.8 | 38.35 |
| CDX71939 | Canola | nucleus, plastid | 37.6 | 31.23 |
| CDX98311 | Canola | nucleus | 38.0 | 30.45 |
| CDX67755 | Canola | nucleus | 38.4 | 30.38 |
| CDY02487 | Canola | nucleus, plastid | 34.4 | 27.92 |
| CDY61477 | Canola | nucleus, plastid | 33.2 | 27.57 |
| CDY33246 | Canola | nucleus | 33.2 | 27.12 |
| CDY08216 | Canola | nucleus | 33.6 | 25.61 |
| CDY39101 | Canola | nucleus, plastid | 30.8 | 25.25 |
| CDY39099 | Canola | nucleus | 31.6 | 24.92 |
| CDX75751 | Canola | nucleus | 36.0 | 24.19 |
| CDY26148 | Canola | nucleus, plastid | 34.0 | 23.81 |
| CDY51405 | Canola | nucleus | 12.0 | 23.62 |
| CDX93016 | Canola | nucleus | 16.0 | 20.2 |
| CDY33093 | Canola | cytosol, plastid | 33.6 | 19.22 |
| CDX94808 | Canola | nucleus | 23.2 | 18.07 |
Protein Annotations
| EnsemblPlants:CDX70144 | EnsemblPlantsGene:GSBRNA2T00136255001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF35 | PFAM:PF13837 |
| ProteinID:CDX70144 | ProteinID:CDX70144.1 | SEG:seg | UniParc:UPI0004EE309F | MapMan:15.5.20 | : |
Description
BnaA10g24930D
Coordinates
chrLK031790:+:3311717..3312469
Molecular Weight (calculated)
28929.5 Da
IEP (calculated)
9.725
GRAVY (calculated)
-0.958
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: METTTTPPPP AKPQQPHSIV SHRQPSGRED WWTEDATATL LQAWGHRFVR LNFGNLRQND WKEVAGAVNS SHCSGRPKTD TQCKSRIDTL KKKYKAEKAK
101: LSPSAWRFFD RLDVLIGPVS KKPAEEVVKS EALKPYLSLT GNKHRESSRE DDEDEAGDWG LVSRKYPRVE EGDLSEESAC KELARTIVKL GEVYERVEGR
201: KQKMMIELEK QRMEVVKELE LKRINMLMEM QLELEKSKNR KRERVVQVRT
101: LSPSAWRFFD RLDVLIGPVS KKPAEEVVKS EALKPYLSLT GNKHRESSRE DDEDEAGDWG LVSRKYPRVE EGDLSEESAC KELARTIVKL GEVYERVEGR
201: KQKMMIELEK QRMEVVKELE LKRINMLMEM QLELEKSKNR KRERVVQVRT
001: METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKQL
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKQL
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:F4K0Q7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.